JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYEOV_chr11_69289155_69302287	0/0	a0005	313	14	13	1	0	0	0	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	a0006	313	13	0	2	8	0	3	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	a0007	313	4	4	0	0	0	0	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	a0008	313	2	2	0	0	0	0	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	a0009	313	2	2	0	0	0	0	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	a0010	313	1	0	0	0	0	1	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	a0011	313	1	0	0	1	0	0	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	a0012	313	1	0	0	0	0	1	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	a0013	313	1	1	0	0	0	0	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	a0014	313	1	0	0	0	0	1	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	a0015	313	1	1	0	0	0	0	copy fasta	MYEOV	chr11	69289155	69302287
MYF5_chr12_80711912_80724671	1/1	a0001	255	430	96	78	194	14	46	copy fasta	MYF5	chr12	80711912	80724671
MYF6_chr12_80702634_80714474	1/1	a0001	242	380	91	78	163	10	36	copy fasta	MYF6	chr12	80702634	80714474
MYF6_chr12_80702634_80714474	0/0	a0002	242	1	1	0	0	0	0	copy fasta	MYF6	chr12	80702634	80714474
MYF6_chr12_80702634_80714474	0/0	a0003	242	1	0	0	1	0	0	copy fasta	MYF6	chr12	80702634	80714474
MYG1_chr12_53294695_53312177	0/1	a0001	376	352	77	75	156	9	34	copy fasta	MYG1	chr12	53294695	53312177
MYG1_chr12_53294695_53312177	1/0	a0002	376	9	7	1	0	0	0	copy fasta	MYG1	chr12	53294695	53312177
MYG1_chr12_53294695_53312177	0/0	a0003	376	5	5	0	0	0	0	copy fasta	MYG1	chr12	53294695	53312177
MYG1_chr12_53294695_53312177	0/0	a0004	376	1	1	0	0	0	0	copy fasta	MYG1	chr12	53294695	53312177
MYG1_chr12_53294695_53312177	0/0	a0005	376	1	0	0	0	1	0	copy fasta	MYG1	chr12	53294695	53312177
MYH10_chr17_8469224_8635725	1/1	a0001	2007	263	74	55	101	10	21	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	a0002	2007	3	0	0	3	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	a0003	2007	3	0	0	0	0	3	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	a0004	2007	2	2	0	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	a0005	2007	1	0	1	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	a0006	2007	1	0	0	0	0	1	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	a0007	2007	1	0	0	0	0	1	copy fasta	MYH10	chr17	8469224	8635725
MYH11_chr16_15698135_15862028	0/0	a0001	1972	215	75	33	63	10	34	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/1	a0002	1972	58	6	13	27	3	8	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	a0003	1972	4	0	3	0	1	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	a0004	1972	4	4	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	a0005	1972	2	0	0	0	2	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	a0006	1972	2	0	0	2	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	a0007	1972	1	0	0	1	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	a0008	1037	1	0	1	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	a0009	1972	1	1	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	a0010	1972	1	0	0	1	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	a0011	1972	1	0	0	0	0	1	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	a0012	1972	1	0	0	1	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	a0013	1972	1	0	1	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	a0014	1972	1	0	0	0	0	1	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	a0015	1972	1	0	0	1	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	a0016	1972	1	0	0	1	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	a0017	1972	1	0	1	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	a0018	1972	1	0	0	1	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH13_chr17_10295865_10378006	0/0	a0001	1938	129	39	33	42	7	8	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0002	1938	55	6	9	36	0	4	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	1/0	a0003	1938	54	11	12	20	3	7	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/1	a0004	1938	44	2	12	25	1	3	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0005	1938	23	6	3	12	0	2	copy fasta	MYH13	chr17	10295865	10378006