JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYH13_chr17_10295865_10378006	0/0	a0006	1938	14	4	2	8	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0007	1938	8	4	1	1	0	2	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0008	1938	5	0	0	0	0	5	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0009	1938	5	5	0	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0010	1938	4	0	0	4	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0011	1938	3	0	3	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0012	1938	3	3	0	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0013	1938	2	0	0	2	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0014	1938	2	0	1	1	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0015	1938	2	0	1	0	1	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0016	1938	2	0	0	0	1	1	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0017	1938	2	2	0	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0018	1938	1	0	0	0	0	1	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0019	1938	1	0	0	0	0	1	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0020	1938	1	0	0	1	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0021	1938	1	1	0	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0022	1938	1	0	0	0	1	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0023	1938	1	0	0	1	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0024	1938	1	0	0	1	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0025	1938	1	1	0	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0026	1938	1	0	1	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0027	1938	1	1	0	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0028	1938	1	0	0	0	0	1	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0029	1938	1	1	0	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0030	1938	1	0	0	1	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0031	1938	1	1	0	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0032	1938	1	0	0	1	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0033	1938	1	0	0	0	0	1	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0034	1938	1	0	0	1	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0035	1938	1	0	0	0	0	1	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0036	1938	1	0	0	0	1	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0037	1938	1	0	0	1	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0038	1938	1	0	0	0	0	1	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0039	1938	1	0	1	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0040	1938	1	0	1	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0041	1938	1	1	0	0	0	0	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	a0042	1938	1	0	0	0	1	0	copy fasta	MYH13	chr17	10295865	10378006
MYH14_chr19_50198622_50315540	1/1	a0001	2036	209	44	47	73	9	34	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0002	2036	48	14	9	19	2	4	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0003	2036	5	4	1	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0004	2036	3	2	0	0	1	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0005	2036	3	3	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0006	2036	3	3	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0007	2036	3	0	3	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0008	2036	2	1	1	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0009	2036	1	0	0	1	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0010	2036	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0011	2036	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0012	2036	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0013	2036	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540