JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYH14_chr19_50198622_50315540	0/0	a0014	2036	1	0	0	1	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0015	2036	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0016	2036	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0017	2036	1	0	1	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0018	2036	1	0	0	1	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0019	2036	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0020	2036	1	0	0	0	0	1	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0021	2036	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0022	2036	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0023	2036	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0024	269	1	0	0	1	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0025	2036	1	0	1	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0026	2036	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0027	2036	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0028	2036	1	0	1	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0029	2036	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	a0030	2036	1	0	0	0	0	1	copy fasta	MYH14	chr19	50198622	50315540
MYH15_chr3_108375368_108515596	1/0	a0001	1926	90	22	14	42	1	10	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	a0002	1926	76	50	14	1	1	10	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	a0003	1926	69	1	12	51	0	5	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	a0004	1926	39	10	20	0	5	4	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/1	a0005	1926	12	0	3	0	3	5	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	a0006	1926	5	4	1	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	a0007	1926	3	3	0	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	a0008	1926	2	0	0	2	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	a0009	1926	1	0	1	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	a0010	1926	1	0	0	1	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	a0011	1926	1	0	0	1	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	a0012	1926	1	0	1	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	a0013	1926	1	0	0	1	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	a0014	1926	1	1	0	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	a0015	1926	1	1	0	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	a0016	1926	1	1	0	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	a0017	1926	1	1	0	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	a0018	1926	1	0	0	1	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH1_chr17_10487307_10523542	1/0	a0001	1939	303	76	70	105	11	40	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	a0002	1939	27	1	6	20	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	a0003	1939	5	0	2	3	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	a0004	1939	4	4	0	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	a0005	1939	2	1	1	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	a0006	1939	2	0	1	0	1	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	a0007	1939	2	2	0	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	a0008	954	1	0	0	1	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	a0009	1939	1	1	0	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	a0010	1939	1	0	1	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	a0011	1939	1	1	0	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	a0012	1939	1	1	0	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	a0013	1939	1	0	0	1	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	a0014	1939	1	1	0	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	a0015	1939	1	0	0	1	0	0	copy fasta	MYH1	chr17	10487307	10523542