JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYH1_chr17_10487307_10523542	0/0	a0016	1939	1	0	0	1	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/1	a0017	1939	1	0	0	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	a0018	1939	1	0	0	1	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	a0019	1939	1	1	0	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	a0020	1939	1	1	0	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	a0021	1939	1	0	0	1	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	a0022	1939	1	0	1	0	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH2_chr17_10516148_10554658	1/1	a0001	1941	339	81	74	133	10	39	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	a0002	1941	2	0	0	2	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	a0003	1941	1	0	0	1	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	a0004	1941	1	0	0	0	0	1	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	a0005	1941	1	0	0	1	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	a0006	1941	1	0	0	1	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	a0007	1941	1	1	0	0	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	a0008	1941	1	1	0	0	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	a0009	1941	1	1	0	0	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	a0010	1941	1	0	1	0	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	a0011	1941	1	0	0	0	0	1	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	a0012	1941	1	0	1	0	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	a0013	1941	1	0	0	0	0	1	copy fasta	MYH2	chr17	10516148	10554658
MYH3_chr17_10623532_10662309	0/1	a0001	1940	182	42	44	63	11	21	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	1/0	a0002	1940	161	34	28	82	1	15	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	a0003	1940	11	3	0	2	1	5	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	a0004	1940	10	8	1	1	0	0	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	a0005	1940	3	3	0	0	0	0	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	a0006	1940	2	0	0	2	0	0	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	a0007	1940	1	0	0	1	0	0	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	a0008	1940	1	0	0	1	0	0	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	a0009	1940	1	0	0	0	0	1	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	a0010	1940	1	0	0	1	0	0	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	a0011	1940	1	0	0	0	1	0	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	a0012	1940	1	0	1	0	0	0	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	a0013	1940	1	0	0	1	0	0	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	a0014	1940	1	0	0	1	0	0	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	a0015	1940	1	0	0	1	0	0	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	a0016	1940	1	0	0	1	0	0	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	a0017	1940	1	0	0	1	0	0	copy fasta	MYH3	chr17	10623532	10662309
MYH4_chr17_10438290_10474559	0/1	a0001	1939	130	22	21	65	4	17	copy fasta	MYH4	chr17	10438290	10474559
MYH4_chr17_10438290_10474559	1/0	a0002	1939	122	37	34	29	6	15	copy fasta	MYH4	chr17	10438290	10474559
MYH4_chr17_10438290_10474559	0/0	a0003	1939	18	1	3	7	1	6	copy fasta	MYH4	chr17	10438290	10474559
MYH4_chr17_10438290_10474559	0/0	a0004	1939	17	10	7	0	0	0	copy fasta	MYH4	chr17	10438290	10474559
MYH4_chr17_10438290_10474559	0/0	a0005	1939	10	0	0	10	0	0	copy fasta	MYH4	chr17	10438290	10474559
MYH4_chr17_10438290_10474559	0/0	a0006	1939	6	6	0	0	0	0	copy fasta	MYH4	chr17	10438290	10474559
MYH4_chr17_10438290_10474559	0/0	a0007	1939	5	2	1	1	0	1	copy fasta	MYH4	chr17	10438290	10474559
MYH4_chr17_10438290_10474559	0/0	a0008	1939	3	2	1	0	0	0	copy fasta	MYH4	chr17	10438290	10474559
MYH4_chr17_10438290_10474559	0/0	a0009	1939	3	0	0	2	0	1	copy fasta	MYH4	chr17	10438290	10474559
MYH4_chr17_10438290_10474559	0/0	a0010	1939	2	2	0	0	0	0	copy fasta	MYH4	chr17	10438290	10474559
MYH4_chr17_10438290_10474559	0/0	a0011	1939	2	0	0	0	0	2	copy fasta	MYH4	chr17	10438290	10474559
MYH4_chr17_10438290_10474559	0/0	a0012	1939	2	2	0	0	0	0	copy fasta	MYH4	chr17	10438290	10474559
MYH4_chr17_10438290_10474559	0/0	a0013	1939	2	2	0	0	0	0	copy fasta	MYH4	chr17	10438290	10474559