JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYH7B_chr20_34950868_35007437	0/0	a0002	1941	55	16	7	20	3	9	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0003	1941	9	8	1	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0004	1941	5	5	0	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0005	1941	3	0	0	3	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0006	1941	2	1	1	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0007	1941	2	0	0	2	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0008	1941	1	0	0	0	0	1	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0009	1941	1	0	1	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0010	1941	1	1	0	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0011	1941	1	0	1	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0012	1941	1	0	1	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0013	1941	1	1	0	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0014	1941	1	0	0	0	0	1	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0015	1941	1	0	0	1	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0016	1941	1	1	0	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0017	1935	1	1	0	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0018	1250	1	0	0	0	0	1	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0019	1941	1	1	0	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0020	1941	1	1	0	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0021	1941	1	0	0	1	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0022	1941	1	0	0	0	0	1	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0023	1941	1	0	1	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0024	1741	1	0	0	1	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0025	1941	1	1	0	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0026	1941	1	0	1	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0027	1941	1	1	0	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0028	1941	1	0	0	1	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0029	1941	1	0	0	0	1	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0030	1941	1	0	1	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	a0031	1941	1	0	0	1	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7_chr14_23407740_23440660	1/1	a0001	1935	339	97	70	116	16	38	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	a0002	1935	1	0	0	1	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	a0003	1935	1	0	0	0	0	1	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	a0004	1935	1	1	0	0	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	a0005	1935	1	0	0	1	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	a0006	1935	1	0	0	0	0	1	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	a0007	1935	1	0	0	0	0	1	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	a0008	1935	1	0	0	0	0	1	copy fasta	MYH7	chr14	23407740	23440660
MYH8_chr17_10385322_10426950	0/0	a0001	1937	146	55	37	30	7	17	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	1/1	a0002	1937	135	20	27	65	3	18	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	a0003	1937	18	1	3	8	1	5	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	a0004	1937	2	2	0	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	a0005	1937	2	0	0	2	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	a0006	1937	2	2	0	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	a0007	1937	1	0	0	1	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	a0008	1937	1	0	0	1	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	a0009	1937	1	0	0	0	0	1	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	a0010	1937	1	0	0	0	1	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	a0011	1937	1	0	0	1	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	a0012	1937	1	0	1	0	0	0	copy fasta	MYH8	chr17	10385322	10426950