JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYH8_chr17_10385322_10426950	0/0	a0013	1937	1	0	1	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	a0014	1937	1	0	1	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	a0015	1937	1	0	1	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	a0016	1509	1	0	0	1	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	a0017	1937	1	1	0	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	a0018	1937	1	0	0	0	0	1	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	a0019	1937	1	1	0	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	a0020	1937	1	1	0	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	a0021	1291	1	0	0	1	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	a0022	1937	1	0	0	0	0	1	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	a0023	1937	1	0	1	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	a0024	1937	1	1	0	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	a0025	1937	1	0	0	0	0	1	copy fasta	MYH8	chr17	10385322	10426950
MYH9_chr22_36276280_36392967	1/1	a0001	1960	182	79	38	33	9	21	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	a0002	1960	52	2	11	27	3	9	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	a0003	1960	1	0	1	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	a0004	1960	1	0	0	1	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	a0005	1960	1	1	0	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	a0006	1960	1	1	0	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	a0007	1960	1	1	0	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	a0008	1960	1	0	0	1	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	a0009	1960	1	0	0	0	0	1	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	a0010	1960	1	0	0	0	0	1	copy fasta	MYH9	chr22	36276280	36392967
MYL10_chr7_101608330_101634296	1/1	a0001	226	377	87	80	154	16	38	copy fasta	MYL10	chr7	101608330	101634296
MYL10_chr7_101608330_101634296	0/0	a0002	226	9	9	0	0	0	0	copy fasta	MYL10	chr7	101608330	101634296
MYL10_chr7_101608330_101634296	0/0	a0003	226	4	0	0	4	0	0	copy fasta	MYL10	chr7	101608330	101634296
MYL10_chr7_101608330_101634296	0/0	a0004	226	1	1	0	0	0	0	copy fasta	MYL10	chr7	101608330	101634296
MYL10_chr7_101608330_101634296	0/0	a0005	226	1	0	0	0	1	0	copy fasta	MYL10	chr7	101608330	101634296
MYL10_chr7_101608330_101634296	0/0	a0006	226	1	0	0	0	0	1	copy fasta	MYL10	chr7	101608330	101634296
MYL10_chr7_101608330_101634296	0/0	a0007	226	1	0	0	1	0	0	copy fasta	MYL10	chr7	101608330	101634296
MYL10_chr7_101608330_101634296	0/0	a0008	226	1	1	0	0	0	0	copy fasta	MYL10	chr7	101608330	101634296
MYL10_chr7_101608330_101634296	0/0	a0009	226	1	0	0	1	0	0	copy fasta	MYL10	chr7	101608330	101634296
MYL10_chr7_101608330_101634296	0/0	a0010	226	1	0	0	0	1	0	copy fasta	MYL10	chr7	101608330	101634296
MYL10_chr7_101608330_101634296	0/0	a0011	226	1	0	0	0	0	1	copy fasta	MYL10	chr7	101608330	101634296
MYL11_chr16_30369802_30382991	1/1	a0001	169	301	86	69	94	14	36	copy fasta	MYL11	chr16	30369802	30382991
MYL11_chr16_30369802_30382991	0/0	a0002	169	2	0	0	2	0	0	copy fasta	MYL11	chr16	30369802	30382991
MYL11_chr16_30369802_30382991	0/0	a0003	51	1	0	1	0	0	0	copy fasta	MYL11	chr16	30369802	30382991
MYL12A_chr18_3242801_3261236	1/1	a0001	171	452	98	78	222	12	40	copy fasta	MYL12A	chr18	3242801	3261236
MYL12B_chr18_3257133_3283461	1/1	a0001	172	430	98	68	210	12	40	copy fasta	MYL12B	chr18	3257133	3283461
MYL1_chr2_210285150_210320174	1/1	a0001	194	381	80	74	172	12	41	copy fasta	MYL1	chr2	210285150	210320174
MYL1_chr2_210285150_210320174	0/0	a0002	194	17	12	0	0	0	5	copy fasta	MYL1	chr2	210285150	210320174
MYL2_chr12_110905845_110925579	1/1	a0001	166	368	82	60	160	16	48	copy fasta	MYL2	chr12	110905845	110925579
MYL3_chr3_46852872_46868444	1/1	a0001	195	396	94	74	170	16	40	copy fasta	MYL3	chr3	46852872	46868444
MYL4_chr17_47204348_47228679	1/1	a0001	197	407	92	80	176	14	43	copy fasta	MYL4	chr17	47204348	47228679
MYL4_chr17_47204348_47228679	0/0	a0002	197	3	3	0	0	0	0	copy fasta	MYL4	chr17	47204348	47228679
MYL4_chr17_47204348_47228679	0/0	a0003	197	1	1	0	0	0	0	copy fasta	MYL4	chr17	47204348	47228679
MYL4_chr17_47204348_47228679	0/0	a0004	197	1	0	0	0	0	1	copy fasta	MYL4	chr17	47204348	47228679
MYL4_chr17_47204348_47228679	0/0	a0005	197	1	0	0	1	0	0	copy fasta	MYL4	chr17	47204348	47228679
MYL4_chr17_47204348_47228679	0/0	a0006	197	1	0	0	1	0	0	copy fasta	MYL4	chr17	47204348	47228679
MYL5_chr4_669542_687028	1/1	a0001	173	341	86	81	119	16	37	copy fasta	MYL5	chr4	669542	687028