JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYL5_chr4_669542_687028	0/0	a0002	173	56	0	0	53	0	3	copy fasta	MYL5	chr4	669542	687028
MYL5_chr4_669542_687028	0/0	a0003	173	5	1	1	0	2	1	copy fasta	MYL5	chr4	669542	687028
MYL5_chr4_669542_687028	0/0	a0004	173	3	3	0	0	0	0	copy fasta	MYL5	chr4	669542	687028
MYL5_chr4_669542_687028	0/0	a0005	173	2	1	1	0	0	0	copy fasta	MYL5	chr4	669542	687028
MYL5_chr4_669542_687028	0/0	a0006	173	2	0	0	2	0	0	copy fasta	MYL5	chr4	669542	687028
MYL5_chr4_669542_687028	0/0	a0007	173	1	0	0	0	0	1	copy fasta	MYL5	chr4	669542	687028
MYL5_chr4_669542_687028	0/0	a0008	173	1	0	1	0	0	0	copy fasta	MYL5	chr4	669542	687028
MYL5_chr4_669542_687028	0/0	a0009	173	1	1	0	0	0	0	copy fasta	MYL5	chr4	669542	687028
MYL6B_chr12_56147587_56162982	0/0	a0001	208	358	86	64	163	16	29	copy fasta	MYL6B	chr12	56147587	56162982
MYL6B_chr12_56147587_56162982	0/0	a0002	208	1	0	0	1	0	0	copy fasta	MYL6B	chr12	56147587	56162982
MYL6B_chr12_56147587_56162982	0/0	a0003	208	1	0	0	0	0	1	copy fasta	MYL6B	chr12	56147587	56162982
MYL6_chr12_56153359_56166579	1/1	a0001	151	337	84	69	142	12	28	copy fasta	MYL6	chr12	56153359	56166579
MYL6_chr12_56153359_56166579	0/0	a0002	151	1	0	1	0	0	0	copy fasta	MYL6	chr12	56153359	56166579
MYL7_chr7_44133864_44146332	1/1	a0001	175	435	95	77	201	16	44	copy fasta	MYL7	chr7	44133864	44146332
MYL7_chr7_44133864_44146332	0/0	a0002	175	2	2	0	0	0	0	copy fasta	MYL7	chr7	44133864	44146332
MYL7_chr7_44133864_44146332	0/0	a0003	175	1	0	1	0	0	0	copy fasta	MYL7	chr7	44133864	44146332
MYL7_chr7_44133864_44146332	0/0	a0004	175	1	1	0	0	0	0	copy fasta	MYL7	chr7	44133864	44146332
MYL7_chr7_44133864_44146332	0/0	a0005	175	1	0	0	1	0	0	copy fasta	MYL7	chr7	44133864	44146332
MYL9_chr20_36536519_36556447	1/1	a0001	172	403	92	76	173	16	44	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	0/0	a0002	172	1	0	0	1	0	0	copy fasta	MYL9	chr20	36536519	36556447
MYLIP_chr6_16124086_16153248	0/1	a0001	445	368	96	49	190	5	27	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	1/0	a0002	445	40	1	13	8	6	11	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	a0003	445	3	0	2	0	1	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	a0004	445	1	0	0	1	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	a0005	445	1	0	0	1	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	a0006	445	1	0	0	0	0	1	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	a0007	445	1	1	0	0	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	a0008	445	1	0	0	0	0	1	copy fasta	MYLIP	chr6	16124086	16153248
MYLK2_chr20_31814356_31839684	1/1	a0001	596	316	81	76	106	16	35	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	a0002	596	5	5	0	0	0	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	a0003	596	2	0	0	1	0	1	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	a0004	596	1	0	0	1	0	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	a0005	596	1	0	1	0	0	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	a0006	596	1	0	1	0	0	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	a0007	596	1	1	0	0	0	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	a0008	596	1	0	0	1	0	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	a0009	596	1	0	0	1	0	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	a0010	596	1	1	0	0	0	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK3_chr16_46697282_46753344	1/0	a0001	819	127	66	27	22	4	7	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/1	a0002	819	85	9	20	22	6	27	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	a0003	819	1	0	0	1	0	0	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	a0004	819	1	1	0	0	0	0	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	a0005	819	1	0	1	0	0	0	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	a0006	819	1	0	0	1	0	0	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	a0007	819	1	1	0	0	0	0	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	a0008	819	1	1	0	0	0	0	copy fasta	MYLK3	chr16	46697282	46753344
MYLK4_chr6_2658637_2755922	1/1	a0001	388	286	78	52	112	15	27	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	a0002	388	76	1	15	54	1	5	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	a0003	388	16	2	6	0	2	6	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	a0004	388	5	5	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922