JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYLK_chr3_123605049_123889332	0/0	a0050	1914	1	0	0	0	0	1	copy fasta	MYLK	chr3	123605049	123889332
MYMK_chr9_133509586_133529959	1/1	a0001	221	454	98	81	207	18	48	copy fasta	MYMK	chr9	133509586	133529959
MYMK_chr9_133509586_133529959	0/0	a0002	221	1	0	0	1	0	0	copy fasta	MYMK	chr9	133509586	133529959
MYMK_chr9_133509586_133529959	0/0	a0003	221	1	0	1	0	0	0	copy fasta	MYMK	chr9	133509586	133529959
MYMX_chr6_44211926_44223234	0/1	a0001	84	260	74	46	97	11	31	copy fasta	MYMX	chr6	44211926	44223234
MYMX_chr6_44211926_44223234	1/0	a0002	84	95	1	27	53	4	9	copy fasta	MYMX	chr6	44211926	44223234
MYMX_chr6_44211926_44223234	0/0	a0003	84	67	7	8	43	1	8	copy fasta	MYMX	chr6	44211926	44223234
MYMX_chr6_44211926_44223234	0/0	a0004	84	6	5	1	0	0	0	copy fasta	MYMX	chr6	44211926	44223234
MYMX_chr6_44211926_44223234	0/0	a0005	84	5	5	0	0	0	0	copy fasta	MYMX	chr6	44211926	44223234
MYMX_chr6_44211926_44223234	0/0	a0006	84	1	0	0	1	0	0	copy fasta	MYMX	chr6	44211926	44223234
MYNN_chr3_169768396_169794716	1/1	a0001	610	347	94	64	144	8	35	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	a0002	610	1	0	0	1	0	0	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	a0003	610	1	0	0	1	0	0	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	a0004	610	1	0	0	0	0	1	copy fasta	MYNN	chr3	169768396	169794716
MYO10_chr5_16656907_16941288	0/0	a0001	2058	86	29	22	29	0	6	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/1	a0002	2058	59	14	9	28	2	5	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	1/0	a0003	2058	20	1	5	11	1	1	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0004	2058	17	5	3	6	0	3	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0005	2058	14	9	1	1	0	3	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0006	2058	10	1	2	4	1	2	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0007	2058	9	0	0	8	0	1	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0008	2058	6	5	1	0	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0009	2058	6	6	0	0	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0010	2058	6	0	1	3	0	2	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0011	2058	5	0	2	3	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0012	2058	3	0	0	2	0	1	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0013	2058	3	0	0	3	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0014	2058	3	2	1	0	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0015	2058	2	1	0	0	0	1	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0016	2058	2	0	0	2	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0017	2058	2	2	0	0	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0018	2058	2	2	0	0	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0019	2058	1	0	0	1	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0020	2058	1	0	0	0	0	1	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0021	2058	1	0	0	1	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0022	2058	1	0	0	1	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0023	2058	1	1	0	0	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0024	2058	1	1	0	0	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0025	2058	1	1	0	0	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0026	2058	1	1	0	0	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0027	2058	1	0	1	0	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0028	2058	1	0	0	1	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0029	2058	1	0	0	0	0	1	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0030	2058	1	1	0	0	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0031	2058	1	0	0	0	0	1	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0032	2058	1	1	0	0	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0033	2058	1	0	0	1	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0034	2058	1	0	0	1	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	a0035	2058	1	1	0	0	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO15A_chr17_18103756_18184800	0/0	a0001	3530	56	7	8	37	1	3	copy fasta	MYO15A	chr17	18103756	18184800