JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYO16_chr13_108624611_109213005	0/0	a0009	1880	3	1	2	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	a0010	1880	2	0	1	1	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	a0011	1880	2	1	0	0	0	1	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	a0012	1880	2	1	0	1	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	a0013	1880	2	2	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	a0014	1880	2	0	0	2	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	a0015	1880	2	0	0	1	0	1	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	a0016	1880	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	a0017	1880	1	0	0	1	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	a0018	1880	1	0	0	0	0	1	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	a0019	1880	1	0	0	1	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	a0020	1880	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	a0021	1880	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	a0022	1880	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	a0023	1880	1	0	1	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	a0024	1880	1	0	0	1	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	a0025	1880	1	0	0	0	0	1	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	a0026	1880	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	a0027	1880	1	0	1	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	a0028	1880	1	0	0	1	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	a0029	1880	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	a0030	1880	1	0	0	1	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	a0031	1880	1	0	1	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO18A_chr17_29066122_29185398	0/1	a0001	2054	171	31	39	78	3	19	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	1/0	a0002	2054	115	45	27	15	7	20	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	a0003	2054	5	5	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	a0004	2054	2	2	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	a0005	2054	1	0	0	1	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	a0006	2054	1	1	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	a0007	2054	1	1	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	a0008	2054	1	0	0	1	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	a0009	2054	1	0	0	1	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	a0010	2054	1	1	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	a0011	2054	1	0	1	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	a0012	2054	1	0	1	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	a0013	2054	1	0	0	1	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	a0014	2054	1	0	0	0	0	1	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	a0015	2054	1	0	0	1	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	a0016	2054	1	1	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	a0017	2054	1	1	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18B_chr22_25737188_26036045	0/0	a0001	2567	25	1	5	16	1	2	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	a0002	2567	16	0	3	9	1	3	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/1	a0003	2567	16	0	6	6	1	2	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	a0004	2567	13	6	2	5	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	a0005	2567	10	0	1	7	0	2	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	a0006	2567	10	10	0	0	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	a0007	2567	8	1	0	7	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	a0008	2567	6	5	1	0	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	a0009	2567	6	6	0	0	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	a0010	2567	6	1	4	0	0	1	copy fasta	MYO18B	chr22	25737188	26036045