JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYO1A_chr12_57023517_57055129	0/0	a0009	1043	1	0	1	0	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	a0010	1043	1	1	0	0	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	a0011	309	1	0	1	0	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	a0012	1043	1	1	0	0	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	a0013	1043	1	0	0	1	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	a0014	1043	1	1	0	0	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	a0015	1043	1	0	0	0	1	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1B_chr2_191240404_191430386	1/1	a0001	1136	165	77	24	42	6	14	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	a0002	1136	2	2	0	0	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	a0003	1136	1	1	0	0	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	a0004	1136	1	1	0	0	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	a0005	1136	1	1	0	0	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1C_chr17_1459186_1497686	0/0	a0001	1063	211	74	48	48	9	32	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	1/1	a0002	1063	99	1	16	67	3	10	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	a0003	1063	59	14	10	28	3	4	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	a0004	1063	33	0	5	28	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	a0005	1063	7	5	2	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	a0006	1063	3	0	3	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	a0007	1063	2	0	0	2	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	a0008	1063	2	0	0	0	1	1	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	a0009	1063	2	0	0	2	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	a0010	1063	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	a0011	1063	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	a0012	1063	1	0	1	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	a0013	1063	1	0	1	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	a0014	1063	1	1	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	a0015	1063	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	a0016	1063	1	1	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	a0017	1063	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	a0018	1063	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	a0019	1063	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	a0020	1063	1	0	0	0	0	1	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	a0021	1063	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1D_chr17_32487522_32882124	1/1	a0001	1006	230	67	52	69	10	30	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	a0002	1006	5	5	0	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	a0003	1006	2	0	0	2	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	a0004	1006	1	1	0	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	a0005	1006	1	0	0	1	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	a0006	1006	1	0	0	1	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	a0007	1006	1	1	0	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	a0008	1006	1	0	1	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	a0009	1006	1	0	1	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	a0010	1006	1	0	0	1	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1E_chr15_59127434_59377871	1/0	a0001	1108	222	85	44	66	12	14	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	a0002	1108	1	0	1	0	0	0	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	a0003	1108	1	0	1	0	0	0	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/1	a0004	1108	1	0	0	0	0	0	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	a0005	1108	1	1	0	0	0	0	copy fasta	MYO1E	chr15	59127434	59377871
MYO1F_chr19_8515778_8582442	1/1	a0001	1098	324	86	76	103	18	39	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	a0002	1098	5	0	0	5	0	0	copy fasta	MYO1F	chr19	8515778	8582442