Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
APH1B_chr15_63272605_63314126	0/0	a0005	257	2	0	0	0	2	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	a0006	257	1	0	0	1	0	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	a0007	257	1	0	0	0	1	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	a0008	257	1	0	0	1	0	0	copy fasta	APH1B	chr15	63272605	63314126
API5_chr11_43306996_43349529	1/1	a0001	524	383	89	66	166	16	44	copy fasta	API5	chr11	43306996	43349529
API5_chr11_43306996_43349529	0/0	a0002	524	1	1	0	0	0	0	copy fasta	API5	chr11	43306996	43349529
APIP_chr11_34877295_34921379	0/1	a0001	242	169	60	28	56	4	20	copy fasta	APIP	chr11	34877295	34921379
APIP_chr11_34877295_34921379	0/0	a0002	242	154	16	31	88	4	15	copy fasta	APIP	chr11	34877295	34921379
APIP_chr11_34877295_34921379	0/0	a0003	242	17	2	7	0	2	6	copy fasta	APIP	chr11	34877295	34921379
APIP_chr11_34877295_34921379	0/0	a0004	242	8	8	0	0	0	0	copy fasta	APIP	chr11	34877295	34921379
APIP_chr11_34877295_34921379	0/0	a0005	242	6	6	0	0	0	0	copy fasta	APIP	chr11	34877295	34921379
APIP_chr11_34877295_34921379	0/0	a0006	242	1	0	0	0	0	1	copy fasta	APIP	chr11	34877295	34921379
APLF_chr2_68462585_68585162	1/1	a0001	511	84	25	18	21	3	15	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	a0002	511	39	33	6	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	a0003	511	21	14	5	0	1	1	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	a0004	511	13	0	2	7	2	2	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	a0005	510	5	0	3	0	0	2	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	a0006	511	5	5	0	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	a0007	511	4	4	0	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	a0008	511	1	1	0	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	a0009	511	1	1	0	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	a0010	511	1	1	0	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	a0011	511	1	1	0	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	a0012	511	1	1	0	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLNR_chr11_57228591_57242250	1/1	a0001	380	423	92	78	189	16	46	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	a0002	380	6	6	0	0	0	0	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	a0003	380	1	0	0	1	0	0	copy fasta	APLNR	chr11	57228591	57242250
APLN_chrX_129640259_129659956	0/0	a0000	0	1	0	0	1	0	0	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	1/1	a0001	77	315	79	47	146	11	30	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	a0002	77	1	1	0	0	0	0	copy fasta	APLN	chrX	129640259	129659956
APLP1_chr19_35863574_35884792	1/1	a0001	651	249	88	34	85	8	32	copy fasta	APLP1	chr19	35863574	35884792
APLP1_chr19_35863574_35884792	0/0	a0002	651	1	1	0	0	0	0	copy fasta	APLP1	chr19	35863574	35884792
APLP1_chr19_35863574_35884792	0/0	a0003	651	1	0	0	0	0	1	copy fasta	APLP1	chr19	35863574	35884792
APLP1_chr19_35863574_35884792	0/0	a0004	651	1	0	0	1	0	0	copy fasta	APLP1	chr19	35863574	35884792
APLP1_chr19_35863574_35884792	0/0	a0005	651	1	0	1	0	0	0	copy fasta	APLP1	chr19	35863574	35884792
APLP1_chr19_35863574_35884792	0/0	a0006	651	1	1	0	0	0	0	copy fasta	APLP1	chr19	35863574	35884792
APLP1_chr19_35863574_35884792	0/0	a0007	651	1	0	1	0	0	0	copy fasta	APLP1	chr19	35863574	35884792
APLP1_chr19_35863574_35884792	0/0	a0008	651	1	0	0	0	0	1	copy fasta	APLP1	chr19	35863574	35884792
APLP2_chr11_130064894_130149805	1/1	a0001	751	218	52	39	108	8	9	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	a0002	751	23	18	1	4	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	a0003	749	12	10	2	0	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	a0004	749	10	2	0	8	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	a0005	751	2	0	0	2	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	a0006	749	2	2	0	0	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	a0007	751	2	2	0	0	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	a0008	751	1	0	0	1	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	a0009	751	1	0	0	1	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	a0010	751	1	0	0	1	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	a0011	751	1	0	0	1	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	a0012	751	1	0	0	0	0	1	copy fasta	APLP2	chr11	130064894	130149805