JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYO1F_chr19_8515778_8582442	0/0	a0003	1011	5	0	1	4	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	a0004	1098	3	0	3	0	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	a0005	1098	1	0	0	1	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	a0006	1098	1	0	0	1	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	a0007	1098	1	1	0	0	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	a0008	1098	1	1	0	0	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	a0009	1098	1	0	0	0	0	1	copy fasta	MYO1F	chr19	8515778	8582442
MYO1G_chr7_44957662_44984015	0/1	a0001	1018	279	75	48	114	11	30	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	a0002	1018	44	10	14	13	3	4	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	1/0	a0003	1018	40	1	14	15	2	7	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	a0004	1018	3	3	0	0	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	a0005	1018	2	0	1	0	0	1	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	a0006	1018	1	0	0	1	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	a0007	1018	1	0	0	1	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	a0008	1018	1	0	0	1	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	a0009	1018	1	0	0	1	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	a0010	1018	1	0	0	0	0	1	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	a0011	1018	1	1	0	0	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	a0012	1018	1	0	0	0	0	1	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	a0013	1018	1	0	1	0	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	a0014	1018	1	1	0	0	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	a0015	1018	1	1	0	0	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1H_chr12_109342900_109453379	0/0	a0001	1038	133	70	19	28	5	11	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	1/0	a0002	1038	79	1	11	52	5	9	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/1	a0003	1038	56	3	12	32	4	4	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	a0004	1038	9	0	3	1	0	5	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	a0005	1038	8	0	5	1	0	2	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	a0006	1038	8	8	0	0	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	a0007	1038	7	0	0	5	0	2	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	a0008	1038	3	0	0	3	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	a0009	1038	2	0	0	2	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	a0010	1038	2	0	0	0	0	2	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	a0011	1038	1	0	0	1	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	a0012	1038	1	0	0	1	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	a0013	1038	1	1	0	0	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	a0014	1038	1	1	0	0	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	a0015	1038	1	0	0	0	0	1	copy fasta	MYO1H	chr12	109342900	109453379
MYO3A_chr10_25929229_26217532	0/0	a0001	1616	64	14	12	28	3	7	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	1/0	a0002	1616	63	11	10	31	4	6	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	a0003	1616	60	10	14	31	2	3	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	a0004	1616	16	10	6	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	a0005	1616	12	0	5	7	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/1	a0006	1616	8	1	4	0	1	1	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	a0007	1616	8	7	0	1	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	a0008	1616	8	3	4	1	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	a0009	1616	6	6	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	a0010	1616	4	3	1	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	a0011	1616	3	3	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	a0012	1616	3	0	0	3	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	a0013	1616	2	2	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532