JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYO3B_chr2_170173147_170660167	0/0	a0032	1341	1	1	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	a0033	1341	1	1	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO5A_chr15_52302283_52533880	0/1	a0001	1880	190	40	25	87	8	29	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	a0002	1880	59	6	14	29	2	8	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	a0003	1880	24	16	1	3	0	4	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	1/0	a0004	1880	18	15	2	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	a0005	1880	3	3	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	a0006	1880	2	1	0	0	1	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	a0007	1880	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	a0008	1880	1	0	0	0	1	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	a0009	1880	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	a0010	1880	1	1	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	a0011	1880	1	0	0	0	0	1	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	a0012	1880	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5B_chr18_49817789_50200147	0/1	a0001	1848	82	37	21	15	1	7	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0002	1849	51	13	7	27	0	4	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0003	1848	36	3	7	23	0	3	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0004	1849	18	2	1	13	1	1	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0005	1849	6	3	0	1	0	2	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	1/0	a0006	1848	5	4	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0007	1849	4	0	1	0	0	3	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0008	1848	3	2	1	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0009	1848	2	2	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0010	1849	2	2	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0011	1848	2	0	2	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0012	1848	2	0	1	0	1	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0013	1849	2	2	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0014	1849	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0015	1848	1	0	1	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0016	1849	1	0	0	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0017	1848	1	0	0	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0018	1848	1	0	0	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0019	1849	1	0	0	0	0	1	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0020	1849	1	0	0	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0021	1849	1	0	0	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0022	1849	1	0	1	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0023	1848	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0024	1848	1	0	1	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0025	1848	1	0	0	0	1	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0026	1849	1	0	0	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0027	1848	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0028	1849	1	0	0	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0029	1849	1	0	1	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0030	1849	1	0	1	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0031	1848	1	0	1	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0032	1848	1	0	1	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0033	1849	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0034	1849	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0035	1849	1	0	0	0	0	1	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	a0036	1848	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147