JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYO5C_chr15_52187322_52300804	1/1	a0001	1742	239	59	46	100	3	29	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	a0002	1742	53	2	4	46	0	1	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	a0003	1742	20	0	3	16	0	1	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	a0004	1742	6	0	3	3	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	a0005	1742	6	5	1	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	a0006	1742	6	6	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	a0007	1742	4	1	2	0	1	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	a0008	1742	4	4	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	a0009	1742	3	3	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	a0010	1742	2	0	0	2	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	a0011	1742	2	0	0	0	0	2	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	a0012	1742	2	2	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	a0013	1742	2	2	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	a0014	1742	2	0	0	0	0	2	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	a0015	1742	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	a0016	1742	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	a0017	1742	1	0	0	0	0	1	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	a0018	1742	1	0	1	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	a0019	1742	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	a0020	1742	1	0	0	1	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	a0021	1742	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	a0022	1742	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	a0023	1742	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO6_chr6_75744239_75924537	1/1	a0001	1285	349	84	35	180	16	32	copy fasta	MYO6	chr6	75744239	75924537
MYO6_chr6_75744239_75924537	0/0	a0002	1285	2	1	1	0	0	0	copy fasta	MYO6	chr6	75744239	75924537
MYO6_chr6_75744239_75924537	0/0	a0003	1285	2	0	2	0	0	0	copy fasta	MYO6	chr6	75744239	75924537
MYO6_chr6_75744239_75924537	0/0	a0004	1285	1	0	1	0	0	0	copy fasta	MYO6	chr6	75744239	75924537
MYO6_chr6_75744239_75924537	0/0	a0005	1285	1	0	0	1	0	0	copy fasta	MYO6	chr6	75744239	75924537
MYO6_chr6_75744239_75924537	0/0	a0006	1285	1	0	0	1	0	0	copy fasta	MYO6	chr6	75744239	75924537
MYO6_chr6_75744239_75924537	0/0	a0007	1285	1	1	0	0	0	0	copy fasta	MYO6	chr6	75744239	75924537
MYO6_chr6_75744239_75924537	0/0	a0008	1285	1	0	1	0	0	0	copy fasta	MYO6	chr6	75744239	75924537
MYO7A_chr11_77123246_77220241	0/0	a0001	2215	56	22	10	19	1	4	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	1/0	a0002	2215	48	2	6	30	2	7	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0003	2215	46	4	9	23	6	4	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/1	a0004	2215	43	3	12	21	3	3	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0005	861	32	16	6	9	0	1	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0006	2215	22	2	5	10	0	5	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0007	2215	20	0	5	13	1	1	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0008	861	19	6	7	6	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0009	2215	12	4	5	0	0	3	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0010	2215	11	9	2	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0011	2215	4	4	0	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0012	2215	3	0	0	3	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0013	2215	3	1	1	0	0	1	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0014	2215	2	1	1	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0015	861	2	2	0	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0016	2215	2	2	0	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0017	2215	2	1	1	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0018	2215	2	2	0	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0019	2215	2	2	0	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241