JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYO7A_chr11_77123246_77220241	0/0	a0020	2215	2	2	0	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0021	2215	1	0	1	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0022	2215	1	0	0	1	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0023	2215	1	0	0	1	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0024	1525	1	0	0	1	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0025	2215	1	0	0	0	0	1	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0026	2215	1	0	0	1	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0027	2215	1	0	0	1	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0028	2215	1	0	0	1	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0029	2215	1	0	0	0	0	1	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0030	2215	1	0	0	0	1	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0031	2215	1	1	0	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0032	2215	1	0	0	1	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0033	2215	1	0	1	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0034	2215	1	0	0	1	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0035	2215	1	1	0	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0036	2215	1	1	0	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0037	2215	1	0	1	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0038	1594	1	0	1	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0039	1496	1	1	0	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0040	2215	1	1	0	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0041	2215	1	1	0	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0042	2215	1	0	0	0	0	1	copy fasta	MYO7A	chr11	77123246	77220241
MYO7A_chr11_77123246_77220241	0/0	a0043	861	1	1	0	0	0	0	copy fasta	MYO7A	chr11	77123246	77220241
MYO7B_chr2_127530683_127642726	1/0	a0001	2142	91	40	17	25	0	8	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/1	a0002	2142	61	3	19	24	5	9	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	a0003	2142	33	3	7	15	2	6	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	a0004	2142	15	2	9	1	2	1	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	a0005	2142	9	6	1	1	0	1	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	a0006	2142	8	0	2	0	2	4	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	a0007	2142	7	4	0	1	1	1	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	a0008	2142	6	5	1	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	a0009	2142	4	4	0	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	a0010	2142	3	3	0	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	a0011	2142	3	0	1	0	0	2	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	a0012	2142	2	1	1	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	a0013	2142	2	0	2	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	a0014	2142	2	2	0	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	a0015	2142	2	2	0	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	a0016	2142	2	0	2	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	a0017	2142	2	0	1	1	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	a0018	2142	1	1	0	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	a0019	2142	1	1	0	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	a0020	2142	1	1	0	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	a0021	2142	1	0	0	1	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	a0022	2142	1	1	0	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	a0023	2142	1	1	0	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	a0024	2142	1	1	0	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	a0025	2142	1	0	0	1	0	0	copy fasta	MYO7B	chr2	127530683	127642726
MYO7B_chr2_127530683_127642726	0/0	a0026	2142	1	0	1	0	0	0	copy fasta	MYO7B	chr2	127530683	127642726