JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYO9B_chr19_17070777_17218286	1/1	a0002	2157	62	9	14	27	1	9	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0003	2157	12	10	2	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0004	2157	7	1	1	0	0	5	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0005	2157	5	3	2	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0006	2157	2	2	0	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0007	2157	2	2	0	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0008	2157	2	1	0	0	1	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0009	2157	2	0	0	0	0	2	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0010	2157	1	1	0	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0011	2157	1	1	0	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0012	2157	1	0	1	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0013	2157	1	1	0	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0014	2157	1	0	0	0	1	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0015	2157	1	0	1	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0016	2157	1	0	0	1	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0017	2157	1	1	0	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0018	2157	1	1	0	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0019	2157	1	1	0	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0020	2157	1	0	0	0	1	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0021	2157	1	0	1	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0022	2157	1	1	0	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0023	2157	1	1	0	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0024	2157	1	0	1	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0025	2157	1	1	0	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0026	2157	1	1	0	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0027	2157	1	0	0	0	0	1	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0028	2157	1	0	0	1	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0029	2157	1	0	1	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0030	2157	1	0	0	1	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0031	2157	1	0	0	1	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	a0032	2157	1	1	0	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYOCD_chr17_12660890_12773949	1/1	a0001	986	313	79	56	131	10	35	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	a0002	986	7	0	1	3	0	3	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	a0003	986	4	4	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	a0004	986	3	0	2	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	a0005	986	2	2	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	a0006	986	2	1	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	a0007	986	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	a0008	986	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	a0009	986	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	a0010	986	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	a0011	986	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	a0012	986	1	0	0	0	0	1	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	a0013	986	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	a0014	986	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	a0015	986	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	a0016	986	1	0	0	0	0	1	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	a0017	986	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	a0018	986	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	a0019	986	1	0	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949