JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYOCD_chr17_12660890_12773949	0/0	a0020	986	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	a0021	986	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCOS_chr1_171617243_171631888	1/1	a0001	80	412	84	78	188	18	42	copy fasta	MYOCOS	chr1	171617243	171631888
MYOC_chr1_171630417_171657688	1/1	a0001	504	385	87	71	180	15	30	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	a0002	504	39	0	11	11	3	14	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	a0003	504	2	0	0	2	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	a0004	504	1	0	0	1	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	a0005	45	1	0	0	1	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	a0006	504	1	0	0	1	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	a0007	504	1	0	0	1	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	a0008	504	1	0	0	1	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	a0009	504	1	1	0	0	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	a0010	504	1	1	0	0	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	a0011	504	1	1	0	0	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOD1_chr11_17714571_17727136	1/1	a0001	320	336	96	76	108	12	42	copy fasta	MYOD1	chr11	17714571	17727136
MYOD1_chr11_17714571_17727136	0/0	a0002	320	2	0	2	0	0	0	copy fasta	MYOD1	chr11	17714571	17727136
MYOD1_chr11_17714571_17727136	0/0	a0003	320	1	0	0	1	0	0	copy fasta	MYOD1	chr11	17714571	17727136
MYOD1_chr11_17714571_17727136	0/0	a0004	320	1	0	0	1	0	0	copy fasta	MYOD1	chr11	17714571	17727136
MYOF_chr10_93301429_93487334	1/1	a0001	2061	166	49	40	48	7	20	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0002	2061	12	0	3	5	1	3	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0003	2061	11	11	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0004	2061	9	9	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0005	883	7	4	1	0	0	2	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0006	2061	4	0	4	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0007	2061	4	0	3	0	0	1	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0008	2061	4	3	0	1	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0009	2061	2	0	2	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0010	2061	2	0	0	2	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0011	2061	2	1	1	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0012	2061	2	0	2	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0013	2061	1	1	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0014	2061	1	0	1	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0015	2061	1	1	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0016	2061	1	0	0	1	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0017	2061	1	0	0	1	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0018	2061	1	1	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0019	2061	1	1	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0020	2061	1	0	1	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0021	2061	1	1	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0022	2061	1	1	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0023	2061	1	0	0	0	0	1	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0024	2061	1	0	0	1	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0025	2061	1	0	0	0	0	1	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0026	2061	1	0	0	1	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	a0027	2061	1	1	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOG_chr1_203078129_203091012	1/1	a0001	224	443	95	83	200	18	45	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	a0002	224	7	0	0	7	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	a0003	224	3	0	0	3	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	a0004	224	3	3	0	0	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	a0005	224	2	0	1	0	0	1	copy fasta	MYOG	chr1	203078129	203091012