JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYOG_chr1_203078129_203091012	0/0	a0006	224	1	0	0	1	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	a0007	224	1	0	0	1	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOM1_chr18_3061807_3224968	0/0	a0001	1685	59	2	12	36	4	5	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0002	1685	42	15	13	11	0	3	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0003	1685	37	2	6	26	0	3	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0004	1685	27	13	4	7	1	2	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0005	1685	18	0	1	14	1	2	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0006	1685	16	1	1	13	0	1	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	1/1	a0007	1685	14	3	3	2	1	3	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0008	1685	12	1	1	10	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0009	1685	9	0	0	6	0	3	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0010	1685	9	4	4	0	1	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0011	1685	7	7	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0012	1685	6	1	0	4	1	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0013	1685	4	0	0	2	1	1	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0014	1685	4	2	1	0	0	1	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0015	1685	3	1	2	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0016	1685	3	3	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0017	1685	2	2	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0018	1673	2	0	2	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0019	1685	2	2	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0020	1685	2	0	2	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0021	1685	2	0	1	1	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0022	1685	2	2	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0023	1685	2	2	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0024	1685	2	0	2	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0025	1685	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0026	1685	1	0	0	1	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0027	1685	1	0	0	0	0	1	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0028	1685	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0029	1685	1	0	0	1	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0030	1685	1	0	0	1	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0031	1685	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0032	1685	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0033	1685	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0034	1685	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0035	1685	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0036	1685	1	0	0	0	0	1	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0037	1685	1	0	0	1	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0038	1685	1	0	0	1	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0039	1685	1	0	0	0	1	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0040	1685	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0041	1685	1	0	0	1	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0042	1685	1	0	0	1	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0043	1685	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0044	1685	1	0	0	1	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0045	1685	1	0	0	1	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0046	1685	1	0	1	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0047	1685	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0048	1685	1	0	0	1	0	0	copy fasta	MYOM1	chr18	3061807	3224968