JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYOM1_chr18_3061807_3224968	0/0	a0049	1685	1	0	0	1	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0050	1685	1	0	0	1	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0051	1685	1	0	0	0	0	1	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0052	1685	1	0	0	0	1	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0053	1685	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0054	1685	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0055	1685	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0056	1685	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0057	1685	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0058	1685	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0059	1685	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0060	1685	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0061	1685	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0062	1685	1	0	0	1	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0063	1685	1	0	0	1	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0064	1685	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0065	1685	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0066	1685	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0067	1685	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	a0068	1685	1	0	0	0	0	1	copy fasta	MYOM1	chr18	3061807	3224968
MYOM2_chr8_2040046_2150456	0/1	a0001	1465	76	13	21	31	6	4	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0002	1465	67	38	8	11	2	8	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0003	1465	41	0	9	30	1	1	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0004	1465	17	3	2	4	2	6	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0005	1465	17	2	4	9	0	2	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0006	1465	11	1	2	7	0	1	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0007	1465	10	0	1	9	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0008	1465	8	0	0	7	1	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0009	1465	8	0	2	6	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0010	1465	6	1	2	3	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0011	1465	6	6	0	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0012	1465	6	0	2	3	0	1	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0013	1465	6	1	0	1	0	4	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0014	1465	5	0	1	4	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0015	1465	4	1	1	1	0	1	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0016	1465	4	1	0	0	0	3	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0017	1465	4	0	0	4	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0018	1465	4	0	0	4	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0019	1465	3	0	2	1	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0020	1465	3	3	0	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0021	1465	3	0	0	3	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0022	1465	3	0	0	3	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0023	1465	3	0	0	3	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0024	1465	2	0	1	1	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0025	1465	2	2	0	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0026	1465	2	1	1	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0027	1465	2	0	2	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0028	1465	2	0	0	2	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0029	1465	2	2	0	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0030	1465	2	2	0	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456