Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
APMAP_chr20_24957925_24997751	1/1	a0001	416	259	76	60	73	12	36	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	a0002	416	7	1	0	5	0	1	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	a0003	416	6	6	0	0	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	a0004	416	3	3	0	0	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	a0005	416	3	1	2	0	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	a0006	416	2	0	0	2	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	a0007	416	2	0	0	0	0	2	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	a0008	416	2	0	0	2	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	a0009	416	1	1	0	0	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	a0010	416	1	1	0	0	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	a0011	416	1	1	0	0	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	a0012	416	1	0	1	0	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	a0013	416	1	0	1	0	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	a0014	416	1	0	0	0	0	1	copy fasta	APMAP	chr20	24957925	24997751
APOA1_chr11_116830751_116842622	1/1	a0001	267	433	92	80	195	16	48	copy fasta	APOA1	chr11	116830751	116842622
APOA1_chr11_116830751_116842622	0/0	a0002	267	13	0	0	13	0	0	copy fasta	APOA1	chr11	116830751	116842622
APOA1_chr11_116830751_116842622	0/0	a0003	267	2	0	0	0	2	0	copy fasta	APOA1	chr11	116830751	116842622
APOA2_chr1_161217292_161228628	1/1	a0001	100	429	90	74	200	16	47	copy fasta	APOA2	chr1	161217292	161228628
APOA2_chr1_161217292_161228628	0/0	a0002	100	1	0	0	0	0	1	copy fasta	APOA2	chr1	161217292	161228628
APOA4_chr11_116815700_116828304	0/1	a0001	396	302	79	50	141	8	23	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	1/0	a0002	396	113	6	16	70	2	18	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	a0003	396	29	8	8	0	6	7	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	a0004	396	5	0	4	0	1	0	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	a0005	396	3	2	1	0	0	0	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	a0006	396	2	0	0	2	0	0	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	a0007	396	1	0	0	1	0	0	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	a0008	396	1	0	0	0	0	1	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	a0009	396	1	0	1	0	0	0	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	a0010	392	1	1	0	0	0	0	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	a0011	396	1	0	0	1	0	0	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	a0012	396	1	0	0	0	1	0	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	a0013	396	1	0	0	0	0	1	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	a0014	396	1	0	0	1	0	0	copy fasta	APOA4	chr11	116815700	116828304
APOA5_chr11_116784367_116796879	1/1	a0001	366	370	64	65	177	17	45	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	a0002	366	66	16	6	42	0	2	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	a0003	366	23	11	11	0	1	0	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	a0004	366	8	0	0	7	0	1	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	a0005	366	5	4	1	0	0	0	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	a0006	366	2	0	0	2	0	0	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	a0007	366	1	0	1	0	0	0	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	a0008	366	1	1	0	0	0	0	copy fasta	APOA5	chr11	116784367	116796879
APOBEC1_chr12_7644400_7670908	0/1	a0001	236	256	41	55	112	10	37	copy fasta	APOBEC1	chr12	7644400	7670908
APOBEC1_chr12_7644400_7670908	1/0	a0002	236	171	56	23	82	2	7	copy fasta	APOBEC1	chr12	7644400	7670908
APOBEC1_chr12_7644400_7670908	0/0	a0003	236	3	0	0	0	2	1	copy fasta	APOBEC1	chr12	7644400	7670908
APOBEC1_chr12_7644400_7670908	0/0	a0004	20	1	0	0	0	0	1	copy fasta	APOBEC1	chr12	7644400	7670908
APOBEC1_chr12_7644400_7670908	0/0	a0005	236	1	1	0	0	0	0	copy fasta	APOBEC1	chr12	7644400	7670908
APOBEC2_chr6_41048202_41069891	1/1	a0001	224	264	87	43	104	4	24	copy fasta	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	a0002	224	87	2	20	50	2	13	copy fasta	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	a0003	224	5	5	0	0	0	0	copy fasta	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	a0004	224	1	0	0	1	0	0	copy fasta	APOBEC2	chr6	41048202	41069891