JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYOM2_chr8_2040046_2150456	0/0	a0081	1465	1	1	0	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0082	1465	1	0	0	1	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0083	1465	1	0	0	0	1	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0084	1465	1	1	0	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0085	1465	1	1	0	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0086	1465	1	0	0	0	0	1	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0087	1465	1	0	0	1	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0088	1465	1	0	0	1	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0089	1465	1	0	0	1	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0090	1465	1	1	0	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0091	1465	1	1	0	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0092	1465	1	0	0	0	0	1	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0093	1465	1	0	0	0	0	1	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	a0094	1465	1	0	1	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM3_chr1_24051041_24117135	0/1	a0001	1437	75	9	12	43	1	9	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0002	1437	47	1	8	29	7	2	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0003	1437	37	0	7	26	1	3	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0004	1437	31	6	4	19	0	2	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0005	1437	25	7	7	8	2	1	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0006	1437	20	6	5	0	2	7	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0007	1437	19	0	11	1	3	4	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0008	1437	10	1	6	0	0	3	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0009	1437	9	2	1	6	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	1/0	a0010	1437	7	5	1	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0011	1437	7	4	1	2	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0012	1437	5	5	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0013	1437	4	3	1	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0014	1437	4	4	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0015	1437	4	4	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0016	1437	3	0	3	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0017	1437	3	3	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0018	1437	2	0	0	0	0	2	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0019	1437	2	0	1	0	0	1	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0020	1437	2	0	2	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0021	1437	2	2	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0022	1437	2	0	2	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0023	1437	2	2	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0024	1437	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0025	1437	1	0	0	0	0	1	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0026	1437	1	0	0	1	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0027	1437	1	0	0	0	0	1	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0028	1437	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0029	1437	1	0	0	1	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0030	1437	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0031	1437	1	0	1	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0032	1437	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0033	1437	1	0	0	0	0	1	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0034	1437	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0035	1437	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0036	1437	1	0	0	1	0	0	copy fasta	MYOM3	chr1	24051041	24117135