JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYOM3_chr1_24051041_24117135	0/0	a0037	1437	1	0	0	1	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0038	1437	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0039	1437	1	0	1	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0040	1437	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0041	1437	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0042	1437	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0043	1437	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0044	1437	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0045	1437	1	0	0	0	0	1	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0046	1437	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0047	1437	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0048	1437	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0049	1437	1	0	1	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0050	1437	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0051	1437	1	0	0	0	0	1	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0052	1437	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0053	1437	1	0	1	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0054	1437	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0055	1437	1	0	1	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0056	1437	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0057	1437	1	0	0	1	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0058	1437	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0059	1437	1	0	0	1	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0060	1437	1	0	1	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0061	1437	1	0	0	0	0	1	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0062	1437	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0063	1437	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0064	1437	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	a0065	1437	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYORG_chr9_34361666_34381898	0/0	a0001	714	213	34	26	133	2	18	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/1	a0002	714	113	20	20	51	8	13	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	a0003	714	60	6	18	23	3	10	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	a0004	22	58	28	14	11	3	2	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	a0005	714	3	1	2	0	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	a0006	22	1	0	0	0	0	1	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	1/0	a0007	714	1	0	0	0	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	a0008	714	1	0	0	1	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	a0009	714	1	1	0	0	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	a0010	714	1	0	0	1	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYOT_chr5_137862860_137892851	1/1	a0001	498	335	73	71	129	14	46	copy fasta	MYOT	chr5	137862860	137892851
MYOT_chr5_137862860_137892851	0/0	a0002	498	9	9	0	0	0	0	copy fasta	MYOT	chr5	137862860	137892851
MYOT_chr5_137862860_137892851	0/0	a0003	498	5	4	1	0	0	0	copy fasta	MYOT	chr5	137862860	137892851
MYOT_chr5_137862860_137892851	0/0	a0004	498	1	0	0	1	0	0	copy fasta	MYOT	chr5	137862860	137892851
MYOT_chr5_137862860_137892851	0/0	a0005	498	1	1	0	0	0	0	copy fasta	MYOT	chr5	137862860	137892851
MYOT_chr5_137862860_137892851	0/0	a0006	498	1	1	0	0	0	0	copy fasta	MYOT	chr5	137862860	137892851
MYOZ1_chr10_73626612_73646474	1/1	a0001	299	383	89	54	191	8	39	copy fasta	MYOZ1	chr10	73626612	73646474
MYOZ1_chr10_73626612_73646474	0/0	a0002	299	1	1	0	0	0	0	copy fasta	MYOZ1	chr10	73626612	73646474
MYOZ1_chr10_73626612_73646474	0/0	a0003	299	1	0	0	1	0	0	copy fasta	MYOZ1	chr10	73626612	73646474
MYOZ1_chr10_73626612_73646474	0/0	a0004	299	1	0	0	0	0	1	copy fasta	MYOZ1	chr10	73626612	73646474
MYOZ2_chr4_119130832_119192789	1/1	a0001	264	385	90	68	171	18	36	copy fasta	MYOZ2	chr4	119130832	119192789