JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYOZ2_chr4_119130832_119192789	0/0	a0002	264	9	0	0	9	0	0	copy fasta	MYOZ2	chr4	119130832	119192789
MYOZ3_chr5_150656251_150684368	0/1	a0001	251	342	64	67	160	16	34	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	a0002	251	48	28	1	19	0	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	a0003	251	1	1	0	0	0	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	1/0	a0004	251	1	0	0	0	0	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	a0005	251	1	1	0	0	0	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	a0006	251	1	0	0	1	0	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYPN_chr10_68104488_68217017	1/0	a0001	1320	109	17	18	61	1	11	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0002	1320	56	5	14	30	1	6	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/1	a0003	1320	29	9	3	12	0	4	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0004	1320	22	0	3	14	3	2	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0005	1320	9	9	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0006	1320	8	5	0	0	1	2	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0007	1320	8	4	2	2	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0008	1320	7	0	0	7	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0009	1320	6	5	1	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0010	1320	4	3	1	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0011	1320	4	3	1	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0012	1320	4	3	0	1	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0013	1320	4	3	0	0	0	1	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0014	1320	4	3	1	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0015	1320	3	3	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0016	1320	3	0	1	2	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0017	1320	3	2	1	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0018	1320	2	2	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0019	1320	2	2	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0020	1320	2	0	2	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0021	1320	2	0	1	0	0	1	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0022	1320	1	0	0	1	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0023	1320	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0024	1320	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0025	1320	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0026	1320	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0027	1320	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0028	1320	1	0	0	1	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0029	1320	1	0	1	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0030	1320	1	0	0	1	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0031	1320	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0032	1320	1	0	0	0	0	1	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0033	1320	1	0	0	1	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0034	1320	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0035	1320	1	0	0	1	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	a0036	1320	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPOP_chr19_45885023_45907613	1/1	a0001	399	371	84	61	163	18	43	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	a0002	241	20	2	5	10	0	3	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	a0003	399	5	0	5	0	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	a0004	399	4	4	0	0	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	a0005	241	1	1	0	0	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	a0006	399	1	0	1	0	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	a0007	399	1	0	0	1	0	0	copy fasta	MYPOP	chr19	45885023	45907613