JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYPOP_chr19_45885023_45907613	0/0	a0008	399	1	0	0	1	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	a0009	399	1	0	0	1	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	a0010	399	1	1	0	0	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	a0011	399	1	0	0	1	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	a0012	399	1	0	0	1	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYRFL_chr12_69820227_69964097	1/0	a0001	910	133	51	18	50	2	11	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	a0002	910	90	10	23	49	1	7	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	a0003	910	51	15	9	22	1	4	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	a0004	910	12	0	2	7	1	2	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	a0005	910	7	7	0	0	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	a0006	910	6	0	5	0	0	1	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/1	a0007	910	5	0	2	0	1	1	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	a0008	910	3	3	0	0	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	a0009	910	3	0	0	3	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	a0010	910	2	0	0	2	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	a0011	910	2	0	0	2	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	a0012	910	1	1	0	0	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	a0013	910	1	1	0	0	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	a0014	910	1	0	0	1	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	a0015	910	1	0	1	0	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	a0016	910	1	0	0	0	0	1	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	a0017	910	1	0	0	1	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	a0018	910	1	0	0	0	0	1	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	a0019	910	1	0	0	1	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRF_chr11_61747636_61793518	1/1	a0001	1151	317	92	60	108	14	41	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	a0002	1151	4	0	4	0	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	a0003	1151	2	0	0	0	2	0	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	a0004	1151	1	0	0	1	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	a0005	1151	1	1	0	0	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	a0006	1151	1	0	1	0	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	a0007	1151	1	0	0	0	0	1	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	a0008	1151	1	0	1	0	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	a0009	1151	1	1	0	0	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	a0010	1151	1	0	0	1	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRIP_chr3_39804609_40265321	1/1	a0001	859	123	48	18	41	5	9	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	a0002	859	21	17	4	0	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	a0003	859	16	2	0	11	1	2	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	a0004	859	5	0	0	2	0	3	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	a0005	859	2	0	0	0	0	2	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	a0006	859	2	2	0	0	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	a0007	859	1	1	0	0	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYSM1_chr1_58649743_58705062	0/0	a0001	828	139	21	24	75	5	14	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	1/1	a0002	828	137	23	19	75	6	12	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	a0003	828	59	0	7	42	1	9	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	a0004	828	58	39	15	0	0	4	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	a0005	828	8	8	0	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	a0006	828	4	4	0	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	a0007	828	2	0	1	0	0	1	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	a0008	828	1	0	0	1	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	a0009	828	1	0	0	1	0	0	copy fasta	MYSM1	chr1	58649743	58705062