JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
N4BP3_chr5_178108532_178131081	0/0	a0008	544	1	0	0	1	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	a0009	544	1	0	1	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	a0010	544	1	0	0	0	0	1	copy fasta	N4BP3	chr5	178108532	178131081
N6AMT1_chr21_28867191_28890367	1/1	a0001	214	341	72	60	170	7	30	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	a0002	214	61	6	14	30	3	8	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	a0003	214	15	15	0	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	a0004	214	2	0	2	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	a0005	214	1	1	0	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	a0006	214	1	0	0	1	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	a0007	214	1	0	0	1	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
NAA10_chrX_153924225_153940037	1/1	a0001	235	289	76	49	127	7	28	copy fasta	NAA10	chrX	153924225	153940037
NAA10_chrX_153924225_153940037	0/0	a0002	45	1	0	1	0	0	0	copy fasta	NAA10	chrX	153924225	153940037
NAA10_chrX_153924225_153940037	0/0	a0003	45	1	0	0	1	0	0	copy fasta	NAA10	chrX	153924225	153940037
NAA10_chrX_153924225_153940037	0/0	a0004	205	1	0	0	1	0	0	copy fasta	NAA10	chrX	153924225	153940037
NAA11_chr4_79311647_79331061	1/1	a0001	229	391	86	64	187	16	36	copy fasta	NAA11	chr4	79311647	79331061
NAA11_chr4_79311647_79331061	0/0	a0002	229	4	4	0	0	0	0	copy fasta	NAA11	chr4	79311647	79331061
NAA11_chr4_79311647_79331061	0/0	a0003	229	2	0	0	2	0	0	copy fasta	NAA11	chr4	79311647	79331061
NAA11_chr4_79311647_79331061	0/0	a0004	229	1	0	0	1	0	0	copy fasta	NAA11	chr4	79311647	79331061
NAA15_chr4_139296505_139396384	1/1	a0001	866	331	79	58	143	14	35	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	a0002	866	1	1	0	0	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	a0003	866	1	0	0	0	0	1	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	a0004	866	1	0	0	1	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA16_chr13_41306267_41382030	0/0	a0001	864	328	63	60	163	11	31	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	a0002	864	17	15	2	0	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	a0003	864	2	0	0	2	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	a0004	864	1	1	0	0	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	a0005	864	1	0	1	0	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	a0006	864	1	0	1	0	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	a0007	676	1	0	0	0	0	1	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	a0008	864	1	0	0	1	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	a0009	864	1	1	0	0	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	a0010	864	1	0	0	0	1	0	copy fasta	NAA16	chr13	41306267	41382030
NAA20_chr20_20012362_20038655	1/1	a0001	178	438	94	72	210	14	46	copy fasta	NAA20	chr20	20012362	20038655
NAA25_chr12_112021689_112113783	1/1	a0001	972	215	58	35	80	5	35	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	a0002	972	91	7	14	67	0	3	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	a0003	972	33	25	7	0	1	0	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	a0004	972	1	1	0	0	0	0	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	a0005	972	1	1	0	0	0	0	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	a0006	972	1	0	0	1	0	0	copy fasta	NAA25	chr12	112021689	112113783
NAA30_chr14_57385586_57420906	1/1	a0001	362	252	83	45	92	4	26	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	a0002	362	2	0	2	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	a0003	362	1	1	0	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	a0004	362	1	0	1	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA35_chr9_85936146_86030462	1/1	a0001	725	282	78	42	126	8	26	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	a0002	725	2	2	0	0	0	0	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	a0003	725	2	2	0	0	0	0	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	a0004	725	1	0	1	0	0	0	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	a0005	725	1	0	1	0	0	0	copy fasta	NAA35	chr9	85936146	86030462
NAA38_chr17_7851685_7862559	1/1	a0001	125	421	92	78	183	18	48	copy fasta	NAA38	chr17	7851685	7862559
NAA38_chr17_7851685_7862559	0/0	a0002	125	1	0	0	1	0	0	copy fasta	NAA38	chr17	7851685	7862559