JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NAA40_chr11_63934002_63962319	1/1	a0001	237	296	83	54	103	16	38	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	a0002	237	1	1	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	a0003	237	1	0	0	1	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA50_chr3_113711458_113751249	1/1	a0001	169	400	88	68	188	14	40	copy fasta	NAA50	chr3	113711458	113751249
NAA60_chr16_3438680_3491953	1/1	a0001	242	372	91	71	156	12	40	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	a0002	242	3	3	0	0	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	a0003	242	1	0	1	0	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA80_chr3_50291402_50304405	1/1	a0001	286	259	64	54	87	13	39	copy fasta	NAA80	chr3	50291402	50304405
NAA80_chr3_50291402_50304405	0/0	a0002	286	111	16	15	79	0	1	copy fasta	NAA80	chr3	50291402	50304405
NAA80_chr3_50291402_50304405	0/0	a0003	286	3	3	0	0	0	0	copy fasta	NAA80	chr3	50291402	50304405
NAA80_chr3_50291402_50304405	0/0	a0004	286	1	0	0	1	0	0	copy fasta	NAA80	chr3	50291402	50304405
NAA80_chr3_50291402_50304405	0/0	a0005	286	1	0	0	1	0	0	copy fasta	NAA80	chr3	50291402	50304405
NAA80_chr3_50291402_50304405	0/0	a0006	286	1	1	0	0	0	0	copy fasta	NAA80	chr3	50291402	50304405
NAA80_chr3_50291402_50304405	0/0	a0007	286	1	0	1	0	0	0	copy fasta	NAA80	chr3	50291402	50304405
NAA80_chr3_50291402_50304405	0/0	a0008	286	1	0	0	0	1	0	copy fasta	NAA80	chr3	50291402	50304405
NAAA_chr4_75908660_75946013	0/0	a0001	359	161	69	24	38	5	25	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	1/1	a0002	359	116	1	18	84	5	6	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	a0003	359	93	9	22	52	3	7	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	a0004	359	9	0	1	8	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	a0005	359	6	6	0	0	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	a0006	359	5	3	2	0	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	a0007	359	3	3	0	0	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	a0008	359	3	0	3	0	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	a0009	359	1	1	0	0	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	a0010	359	1	0	0	1	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	a0011	359	1	0	0	0	1	0	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	a0012	359	1	0	0	1	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAALAD2_chr11_90129663_90197894	1/1	a0001	740	274	47	48	138	11	28	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	a0002	740	42	17	7	2	1	15	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	a0003	740	14	1	3	9	0	1	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	a0004	740	14	14	0	0	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	a0005	740	7	6	1	0	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	a0006	740	3	3	0	0	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	a0007	740	2	0	0	2	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	a0008	740	2	2	0	0	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	a0009	740	1	0	0	0	0	1	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	a0010	740	1	0	0	0	0	1	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	a0011	399	1	0	0	0	0	1	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	a0012	740	1	0	0	1	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	a0013	740	1	0	0	0	0	1	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	a0014	740	1	0	1	0	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALADL1_chr11_65039818_65063553	1/1	a0001	740	332	94	56	130	16	34	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	a0002	740	21	0	1	20	0	0	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	a0003	740	5	0	3	0	2	0	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	a0004	740	3	0	0	3	0	0	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	a0005	740	2	0	0	1	0	1	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	a0006	740	2	2	0	0	0	0	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	a0007	740	1	0	0	1	0	0	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	a0008	740	1	1	0	0	0	0	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	a0009	740	1	0	0	1	0	0	copy fasta	NAALADL1	chr11	65039818	65063553