JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NAALADL1_chr11_65039818_65063553	0/0	a0010	740	1	1	0	0	0	0	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	a0011	740	1	0	0	1	0	0	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	a0012	329	1	0	0	1	0	0	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	a0013	740	1	0	0	0	0	1	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL2_chr3_174854334_175815548	0/0	a0001	795	11	10	1	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	a0002	795	10	6	4	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	a0003	795	10	6	4	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	a0004	795	9	6	3	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	a0005	795	6	4	2	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	a0006	795	5	2	3	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	a0007	795	3	2	1	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	a0008	795	2	2	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	a0009	795	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	a0010	795	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	a0011	795	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	a0012	795	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	a0013	795	1	0	1	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	a0014	795	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	a0015	795	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	a0016	795	1	0	1	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAB1_chr2_190644083_190697766	1/1	a0001	487	371	85	62	166	14	42	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	a0002	487	2	0	0	2	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	a0003	487	1	1	0	0	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB2_chr12_57084114_57100476	1/1	a0001	525	391	91	82	159	18	39	copy fasta	NAB2	chr12	57084114	57100476
NAB2_chr12_57084114_57100476	0/0	a0002	525	2	2	0	0	0	0	copy fasta	NAB2	chr12	57084114	57100476
NAB2_chr12_57084114_57100476	0/0	a0003	525	1	1	0	0	0	0	copy fasta	NAB2	chr12	57084114	57100476
NAB2_chr12_57084114_57100476	0/0	a0004	525	1	0	0	1	0	0	copy fasta	NAB2	chr12	57084114	57100476
NAB2_chr12_57084114_57100476	0/0	a0005	525	1	0	0	0	0	1	copy fasta	NAB2	chr12	57084114	57100476
NABP1_chr2_191673136_191691943	1/1	a0001	204	394	94	68	180	10	40	copy fasta	NABP1	chr2	191673136	191691943
NABP2_chr12_56219342_56234854	1/1	a0001	211	412	94	78	180	18	40	copy fasta	NABP2	chr12	56219342	56234854
NACA2_chr17_61585421_61596219	1/0	a0001	215	340	90	68	141	11	29	copy fasta	NACA2	chr17	61585421	61596219
NACA2_chr17_61585421_61596219	0/1	a0002	196	53	5	11	18	4	14	copy fasta	NACA2	chr17	61585421	61596219
NACA2_chr17_61585421_61596219	0/0	a0003	215	3	0	0	0	1	2	copy fasta	NACA2	chr17	61585421	61596219
NACA2_chr17_61585421_61596219	0/0	a0004	215	1	1	0	0	0	0	copy fasta	NACA2	chr17	61585421	61596219
NACA2_chr17_61585421_61596219	0/0	a0005	15	1	0	0	0	0	1	copy fasta	NACA2	chr17	61585421	61596219
NACA2_chr17_61585421_61596219	0/0	a0006	215	1	0	0	1	0	0	copy fasta	NACA2	chr17	61585421	61596219
NACA2_chr17_61585421_61596219	0/0	a0007	196	1	0	1	0	0	0	copy fasta	NACA2	chr17	61585421	61596219
NACAD_chr7_45075437_45093969	1/0	a0001	1562	135	11	15	90	4	14	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0002	1562	41	1	13	17	2	8	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0003	1562	39	26	4	1	0	8	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/1	a0004	1562	34	0	4	26	1	2	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0005	1562	25	1	12	6	3	3	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0006	1562	22	1	10	11	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0007	1562	10	8	2	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0008	1562	9	8	1	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0009	1562	7	0	6	0	1	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0010	1482	6	6	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0011	1522	5	0	2	0	1	2	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0012	1562	4	4	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0013	1562	4	4	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969