Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ABCC12_chr16_48075882_48160993	0/0	a0022	1359	1	1	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	a0023	1359	1	1	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	a0024	1359	1	1	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC1_chr16_15944616_16148053	0/1	a0001	1531	228	77	33	74	12	31	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	a0002	1531	8	0	3	5	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	a0003	1531	3	3	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	a0004	1531	3	2	1	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	a0005	1531	1	1	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	a0006	1531	1	1	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	a0007	1531	1	1	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	a0008	1531	1	0	0	0	0	1	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	a0009	1531	1	1	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	a0010	1531	1	0	1	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	a0011	1531	1	0	0	1	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC2_chr10_99777640_99857594	0/1	a0001	1545	246	41	43	128	5	28	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0002	1545	39	11	9	10	2	7	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0003	1545	9	8	1	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0004	1545	7	6	1	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0005	1545	4	1	2	0	1	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0006	1545	3	2	1	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	1/0	a0007	1545	3	2	0	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0008	1545	2	0	0	0	2	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0009	1545	2	2	0	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0010	1545	2	0	1	0	0	1	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0011	1545	2	2	0	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0012	99	1	0	1	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0013	1545	1	1	0	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0014	1545	1	0	0	0	0	1	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0015	1545	1	1	0	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0016	1545	1	0	1	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0017	1545	1	0	0	1	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0018	1545	1	0	0	1	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0019	1545	1	0	1	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0020	1545	1	1	0	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0021	1545	1	0	1	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0022	1545	1	1	0	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0023	1545	1	0	0	1	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0024	1545	1	0	0	0	0	1	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0025	1545	1	0	0	1	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0026	1545	1	1	0	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0027	1545	1	0	0	1	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	a0028	1545	1	0	0	1	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC3_chr17_50629881_50697253	1/1	a0001	1527	286	47	56	139	9	33	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	a0002	1527	12	11	1	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	a0003	1527	8	1	5	0	2	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	a0004	1527	7	6	1	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	a0005	1527	6	6	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	a0006	1527	3	0	0	3	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	a0007	1527	2	2	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	a0008	1527	1	1	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253