Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
APOBEC2_chr6_41048202_41069891	0/0	a0005	224	1	0	0	0	0	1	copy fasta	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	a0006	224	1	0	0	1	0	0	copy fasta	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	a0007	224	1	0	1	0	0	0	copy fasta	APOBEC2	chr6	41048202	41069891
APOBEC3A_chr22_38952609_38968184	0/0	a0000	0	41	3	8	26	1	3	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	1/1	a0001	199	305	81	73	95	15	39	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	a0002	199	11	10	1	0	0	0	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	a0003	199	2	2	0	0	0	0	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	a0004	199	1	0	0	1	0	0	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3B_chr22_38977347_38997779	0/1	a0001	382	142	23	29	72	4	13	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	a0002	382	100	16	32	32	11	9	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	1/0	a0003	382	46	8	6	25	1	5	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	a0004	382	25	16	4	0	0	5	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	a0005	382	10	10	0	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	a0006	382	7	7	0	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	a0007	302	6	6	0	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	a0008	382	5	5	0	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	a0009	382	3	0	0	3	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	a0010	382	3	3	0	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	a0011	382	1	0	1	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	a0012	382	1	1	0	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	a0013	382	1	0	0	1	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	a0014	382	1	0	0	1	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	a0015	382	1	0	0	1	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	a0016	382	1	0	0	1	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	a0017	382	1	1	0	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3C_chr22_39009257_39025352	1/1	a0001	190	445	88	82	210	13	50	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	a0002	190	9	9	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	a0003	190	1	0	0	1	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	a0004	190	1	0	0	1	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	a0005	190	1	0	0	1	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	a0006	190	1	0	0	1	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	a0007	190	1	0	0	0	1	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	a0008	190	1	1	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3D_chr22_39016127_39038277	1/1	a0001	386	439	87	80	209	14	47	copy fasta	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	a0002	386	7	6	1	0	0	0	copy fasta	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	a0003	386	4	4	0	0	0	0	copy fasta	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	a0004	385	3	0	3	0	0	0	copy fasta	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	a0005	386	1	0	1	0	0	0	copy fasta	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	a0006	386	1	1	0	0	0	0	copy fasta	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	a0007	386	1	0	1	0	0	0	copy fasta	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	a0008	386	1	0	0	0	0	1	copy fasta	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	a0009	386	1	0	0	1	0	0	copy fasta	APOBEC3D	chr22	39016127	39038277
APOBEC3F_chr22_39035864_39060972	0/0	a0001	373	222	19	48	123	5	27	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	1/1	a0002	373	170	57	23	62	9	17	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	a0003	373	10	8	2	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	a0004	373	5	2	3	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	a0005	373	3	0	0	3	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	a0006	373	3	2	1	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	a0007	373	3	0	3	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	a0008	373	2	0	0	2	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972