JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NACAD_chr7_45075437_45093969	0/0	a0014	1562	3	0	3	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0015	1562	3	3	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0016	1522	2	0	0	1	0	1	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0017	1482	2	2	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0018	1522	2	0	0	2	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0019	1562	2	0	0	2	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0020	1562	2	0	1	0	0	1	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0021	1562	2	2	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0022	1562	2	0	0	2	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0023	1522	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0024	1562	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0025	1562	1	0	0	0	0	1	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0026	1562	1	0	0	0	0	1	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0027	1562	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0028	1562	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0029	1482	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0030	1602	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0031	1562	1	0	1	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0032	1602	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0033	1562	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0034	1562	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0035	1562	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0036	1562	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0037	1562	1	0	0	0	0	1	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0038	1522	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0039	1442	1	0	0	0	0	1	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0040	1562	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0041	1562	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0042	1562	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0043	1482	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0044	1522	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0045	1522	1	0	0	0	0	1	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0046	1562	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0047	1522	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0048	1562	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0049	1562	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0050	1562	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0051	1562	1	0	1	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0052	1562	1	0	1	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0053	1522	1	0	0	0	1	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0054	1562	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0055	1402	1	0	0	0	0	1	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0056	1522	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0057	1562	1	0	1	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0058	1562	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0059	1562	1	0	1	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0060	1562	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0061	1562	1	0	0	0	0	1	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0062	1562	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0063	1562	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969