JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NACAD_chr7_45075437_45093969	0/0	a0064	1562	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0065	1562	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0066	1562	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0067	1562	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0068	1562	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0069	1562	1	1	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0070	1562	1	0	0	0	1	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	a0071	1562	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACA_chr12_56707427_56730299	0/0	a0001	2055	158	21	34	74	7	22	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	1/0	a0002	2078	91	9	20	50	2	9	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0003	2032	12	11	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0004	2055	12	8	1	0	1	2	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0005	2055	12	7	2	0	3	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0006	2078	10	9	1	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0007	2078	5	0	4	0	1	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0008	2055	4	0	0	4	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0009	2055	4	0	0	4	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0010	2078	4	4	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0011	2055	3	3	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0012	2055	3	3	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0013	2055	3	2	1	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0014	2078	3	3	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0015	2078	2	2	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0016	1320	2	0	0	2	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0017	2055	2	0	0	2	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0018	2032	2	0	2	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0019	2055	2	0	0	2	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0020	2078	2	0	0	2	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0021	2055	2	0	0	2	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0022	2216	1	1	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0023	2032	1	1	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0024	2055	1	1	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0025	2055	1	0	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0026	2032	1	1	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0027	2032	1	0	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0028	2055	1	1	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0029	2055	1	1	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0030	2055	1	0	1	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0031	2032	1	0	0	0	0	1	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0032	2055	1	0	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0033	2055	1	0	0	0	0	1	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0034	2055	1	0	1	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0035	1647	1	1	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0036	2055	1	0	0	0	0	1	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0037	2032	1	0	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0038	2311	1	0	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0039	2078	1	0	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0040	2055	1	0	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0041	2055	1	0	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0042	2055	1	0	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299