JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NACA_chr12_56707427_56730299	0/0	a0043	475	1	0	1	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0044	2032	1	0	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0045	2078	1	0	0	1	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0046	2101	1	1	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/1	a0047	2055	1	0	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0048	2078	1	1	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACA_chr12_56707427_56730299	0/0	a0049	2055	1	1	0	0	0	0	copy fasta	NACA	chr12	56707427	56730299
NACC1_chr19_13113264_13146147	1/1	a0001	527	317	91	64	108	12	40	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	a0002	527	5	0	0	5	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	a0003	527	3	1	0	0	0	2	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	a0004	527	1	0	0	1	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC2_chr9_136001537_136100289	1/1	a0001	587	317	72	64	126	15	38	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	a0002	587	16	15	1	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	a0003	587	6	6	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	a0004	585	4	0	3	0	1	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	a0005	587	2	0	0	0	0	2	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	a0006	587	1	0	0	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	a0007	587	1	0	0	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	a0008	585	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NADK2_chr5_36187589_36246925	1/1	a0001	442	376	78	71	181	10	34	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	a0002	442	5	5	0	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	a0003	442	1	0	0	1	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	a0004	442	1	1	0	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	a0005	442	1	0	1	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK_chr1_1746232_1783470	1/0	a0001	446	154	59	10	69	1	14	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/1	a0002	447	122	14	26	67	7	7	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	a0003	446	111	5	18	65	6	17	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	a0004	447	13	0	6	0	1	6	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	a0005	445	6	5	0	0	1	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	a0006	448	5	0	0	1	0	4	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	a0007	447	1	0	0	0	1	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	a0008	446	1	1	0	0	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	a0009	447	1	0	0	0	1	0	copy fasta	NADK	chr1	1746232	1783470
NADSYN1_chr11_71448203_71506816	0/0	a0001	706	182	34	33	86	6	23	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/1	a0002	706	115	22	29	51	5	7	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	a0003	706	37	12	2	16	1	6	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	a0004	706	5	5	0	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	a0005	706	3	3	0	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	a0006	706	3	3	0	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	a0007	706	2	2	0	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	a0008	706	2	0	0	0	0	2	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	a0009	706	1	0	0	1	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	a0010	706	1	1	0	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	a0011	706	1	1	0	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	a0012	706	1	1	0	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	1/0	a0013	706	1	0	0	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NAE1_chr16_66797878_66835976	1/1	a0001	534	365	90	68	149	16	40	copy fasta	NAE1	chr16	66797878	66835976
NAE1_chr16_66797878_66835976	0/0	a0002	534	5	4	1	0	0	0	copy fasta	NAE1	chr16	66797878	66835976
NAE1_chr16_66797878_66835976	0/0	a0003	534	3	3	0	0	0	0	copy fasta	NAE1	chr16	66797878	66835976
NAE1_chr16_66797878_66835976	0/0	a0004	534	1	0	1	0	0	0	copy fasta	NAE1	chr16	66797878	66835976