JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NAGS_chr17_43999622_44014068	0/0	a0003	534	3	0	0	3	0	0	copy fasta	NAGS	chr17	43999622	44014068
NAGS_chr17_43999622_44014068	0/0	a0004	534	3	0	0	3	0	0	copy fasta	NAGS	chr17	43999622	44014068
NAGS_chr17_43999622_44014068	0/0	a0005	534	2	0	0	2	0	0	copy fasta	NAGS	chr17	43999622	44014068
NAGS_chr17_43999622_44014068	0/0	a0006	534	1	1	0	0	0	0	copy fasta	NAGS	chr17	43999622	44014068
NAGS_chr17_43999622_44014068	0/0	a0007	534	1	0	0	1	0	0	copy fasta	NAGS	chr17	43999622	44014068
NAIF1_chr9_128056233_128072320	1/1	a0001	327	315	89	60	118	16	30	copy fasta	NAIF1	chr9	128056233	128072320
NAIF1_chr9_128056233_128072320	0/0	a0002	327	3	3	0	0	0	0	copy fasta	NAIF1	chr9	128056233	128072320
NAIP_chr5_70963166_71030339	0/0	a0001	1403	105	18	30	33	7	17	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	a0002	1403	25	22	2	0	0	1	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	a0003	1403	3	0	2	0	1	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	a0004	1	2	2	0	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	a0005	1403	2	0	0	2	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	a0006	1403	1	1	0	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	a0007	1403	1	1	0	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	a0008	1403	1	0	0	1	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/1	a0009	1403	1	0	0	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NALCN_chr13_101048776_101421508	1/1	a0001	1738	171	59	38	46	9	17	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	a0002	1738	1	1	0	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	a0003	1738	1	0	0	0	1	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	a0004	1738	1	1	0	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	a0005	1738	1	1	0	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	a0006	1738	1	0	0	0	0	1	copy fasta	NALCN	chr13	101048776	101421508
NALF1_chr13_107158510_107872496	0/0	a0001	458	117	60	19	27	4	7	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	a0002	454	9	0	1	7	0	1	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	a0003	458	2	0	2	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF2_chrX_69499326_69537508	0/0	a0000	0	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/1	a0001	472	237	64	30	124	3	15	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	1/0	a0002	472	66	7	16	18	8	16	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	a0003	472	3	2	1	0	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	a0004	472	1	1	0	0	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	a0005	472	1	0	0	0	0	1	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	a0006	472	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	a0007	472	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	a0008	472	1	0	0	0	0	1	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	a0009	300	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	a0010	472	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	a0011	223	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	a0012	169	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	a0013	169	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	a0014	169	1	0	0	0	0	1	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	a0015	73	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	a0016	58	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	a0017	74	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	a0018	59	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NAMPT_chr7_106243298_106289983	1/1	a0001	491	336	90	60	136	8	40	copy fasta	NAMPT	chr7	106243298	106289983
NANOGNB_chr12_7760216_7779121	1/1	a0001	188	405	60	74	212	16	41	copy fasta	NANOGNB	chr12	7760216	7779121
NANOGNB_chr12_7760216_7779121	0/0	a0002	188	41	25	8	3	0	5	copy fasta	NANOGNB	chr12	7760216	7779121
NANOGNB_chr12_7760216_7779121	0/0	a0003	188	4	4	0	0	0	0	copy fasta	NANOGNB	chr12	7760216	7779121
NANOGNB_chr12_7760216_7779121	0/0	a0004	188	4	4	0	0	0	0	copy fasta	NANOGNB	chr12	7760216	7779121
NANOGNB_chr12_7760216_7779121	0/0	a0005	188	3	3	0	0	0	0	copy fasta	NANOGNB	chr12	7760216	7779121