JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NANOGNB_chr12_7760216_7779121	0/0	a0006	188	2	2	0	0	0	0	copy fasta	NANOGNB	chr12	7760216	7779121
NANOGNB_chr12_7760216_7779121	0/0	a0007	188	1	0	0	1	0	0	copy fasta	NANOGNB	chr12	7760216	7779121
NANOGP8_chr15_35078410_35090295	0/0	a0000	0	16	11	5	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/1	a0001	305	198	27	45	100	6	19	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	1/0	a0002	305	120	15	17	67	7	13	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	a0003	305	76	30	3	42	1	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	a0004	305	41	1	10	21	2	7	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	a0005	305	7	1	3	0	2	1	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	a0006	305	7	7	0	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	a0007	305	4	4	0	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	a0008	305	3	0	0	2	0	1	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	a0009	305	1	0	1	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	a0010	305	1	0	0	0	0	1	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	a0011	254	1	0	0	1	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	a0012	305	1	0	0	1	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOG_chr12_7784402_7804146	1/1	a0001	305	323	62	40	191	5	23	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	a0002	305	106	31	36	13	9	17	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	a0003	305	1	0	0	1	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	a0004	305	1	0	0	0	0	1	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	a0005	287	1	0	0	0	0	1	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	a0006	305	1	1	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	a0007	305	1	0	0	1	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOS1_chr10_119024714_119038730	0/0	a0000	0	28	2	7	14	0	5	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	1/1	a0001	292	346	74	62	159	11	38	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	a0002	292	17	17	0	0	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	a0003	292	5	0	1	0	4	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	a0004	293	4	1	0	3	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	a0005	281	1	0	0	0	0	1	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	a0006	281	1	0	0	1	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	a0007	292	1	0	0	1	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	a0008	292	1	0	0	0	1	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS2_chr19_45908214_45919778	1/1	a0001	138	440	90	80	208	14	46	copy fasta	NANOS2	chr19	45908214	45919778
NANOS2_chr19_45908214_45919778	0/0	a0002	138	1	0	0	1	0	0	copy fasta	NANOS2	chr19	45908214	45919778
NANOS2_chr19_45908214_45919778	0/0	a0003	138	1	0	0	1	0	0	copy fasta	NANOS2	chr19	45908214	45919778
NANOS3_chr19_13872134_13885757	1/1	a0001	192	358	68	73	162	16	37	copy fasta	NANOS3	chr19	13872134	13885757
NANOS3_chr19_13872134_13885757	0/0	a0002	198	13	11	1	0	0	1	copy fasta	NANOS3	chr19	13872134	13885757
NANOS3_chr19_13872134_13885757	0/0	a0003	193	8	8	0	0	0	0	copy fasta	NANOS3	chr19	13872134	13885757
NANOS3_chr19_13872134_13885757	0/0	a0004	125	1	1	0	0	0	0	copy fasta	NANOS3	chr19	13872134	13885757
NANP_chr20_25607935_25629014	1/1	a0001	248	382	88	78	152	16	46	copy fasta	NANP	chr20	25607935	25629014
NANP_chr20_25607935_25629014	0/0	a0002	248	2	2	0	0	0	0	copy fasta	NANP	chr20	25607935	25629014
NANS_chr9_98051732_98088077	1/1	a0001	359	224	49	43	89	10	31	copy fasta	NANS	chr9	98051732	98088077
NANS_chr9_98051732_98088077	0/0	a0002	359	88	18	23	46	0	1	copy fasta	NANS	chr9	98051732	98088077
NANS_chr9_98051732_98088077	0/0	a0003	359	2	2	0	0	0	0	copy fasta	NANS	chr9	98051732	98088077
NANS_chr9_98051732_98088077	0/0	a0004	359	1	1	0	0	0	0	copy fasta	NANS	chr9	98051732	98088077
NANS_chr9_98051732_98088077	0/0	a0005	359	1	1	0	0	0	0	copy fasta	NANS	chr9	98051732	98088077
NANS_chr9_98051732_98088077	0/0	a0006	359	1	1	0	0	0	0	copy fasta	NANS	chr9	98051732	98088077
NANS_chr9_98051732_98088077	0/0	a0007	359	1	0	0	1	0	0	copy fasta	NANS	chr9	98051732	98088077
NAP1L1_chr12_76031585_76089685	1/1	a0001	391	355	95	70	140	14	34	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	a0002	391	1	1	0	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L2_chrX_73207299_73219851	1/1	a0001	460	277	76	52	111	11	25	copy fasta	NAP1L2	chrX	73207299	73219851