JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NAP1L2_chrX_73207299_73219851	0/0	a0002	459	3	3	0	0	0	0	copy fasta	NAP1L2	chrX	73207299	73219851
NAP1L2_chrX_73207299_73219851	0/0	a0003	460	1	0	0	0	0	1	copy fasta	NAP1L2	chrX	73207299	73219851
NAP1L2_chrX_73207299_73219851	0/0	a0004	461	1	0	0	1	0	0	copy fasta	NAP1L2	chrX	73207299	73219851
NAP1L3_chrX_93665930_93678578	1/0	a0001	506	167	42	17	86	9	12	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L3_chrX_93665930_93678578	0/1	a0002	506	152	25	35	69	3	19	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L3_chrX_93665930_93678578	0/0	a0003	499	8	0	7	0	0	1	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L3_chrX_93665930_93678578	0/0	a0004	506	6	6	0	0	0	0	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L3_chrX_93665930_93678578	0/0	a0005	506	3	3	0	0	0	0	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L3_chrX_93665930_93678578	0/0	a0006	504	1	0	0	0	1	0	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L3_chrX_93665930_93678578	0/0	a0007	201	1	0	0	1	0	0	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L4_chr11_2939437_2997329	0/1	a0001	375	329	95	51	124	16	42	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L4_chr11_2939437_2997329	0/0	a0002	375	4	3	1	0	0	0	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L4_chr11_2939437_2997329	0/0	a0003	194	1	0	0	1	0	0	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L4_chr11_2939437_2997329	0/0	a0004	375	1	0	0	1	0	0	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L5_chr4_88690913_88702829	1/1	a0001	182	409	93	66	196	12	40	copy fasta	NAP1L5	chr4	88690913	88702829
NAP1L5_chr4_88690913_88702829	0/0	a0002	178	2	0	1	0	0	1	copy fasta	NAP1L5	chr4	88690913	88702829
NAP1L5_chr4_88690913_88702829	0/0	a0003	182	1	0	0	0	0	1	copy fasta	NAP1L5	chr4	88690913	88702829
NAP1L5_chr4_88690913_88702829	0/0	a0004	182	1	0	1	0	0	0	copy fasta	NAP1L5	chr4	88690913	88702829
NAP1L5_chr4_88690913_88702829	0/0	a0005	175	1	1	0	0	0	0	copy fasta	NAP1L5	chr4	88690913	88702829
NAPA_chr19_47482637_47520063	1/1	a0001	295	337	83	70	132	14	36	copy fasta	NAPA	chr19	47482637	47520063
NAPA_chr19_47482637_47520063	0/0	a0002	295	1	1	0	0	0	0	copy fasta	NAPA	chr19	47482637	47520063
NAPB_chr20_23369522_23426488	1/1	a0001	298	376	86	62	180	12	34	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	a0002	298	18	0	0	18	0	0	copy fasta	NAPB	chr20	23369522	23426488
NAPEPLD_chr7_103094776_103154099	0/1	a0001	393	244	36	45	122	12	28	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	a0002	393	82	8	13	44	2	15	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	a0003	393	54	48	6	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	a0004	393	1	0	0	0	0	1	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPG_chr18_10521027_10557764	1/1	a0001	312	402	80	74	194	12	40	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	a0002	312	17	16	1	0	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	a0003	312	4	0	0	4	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	a0004	312	1	0	1	0	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPRT_chr8_143569785_143583330	0/1	a0001	538	380	79	71	175	14	40	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	a0002	538	9	8	1	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	a0003	538	2	2	0	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	a0004	538	2	2	0	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	a0005	538	2	0	0	2	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	a0006	538	2	2	0	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	a0007	538	1	1	0	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	a0008	538	1	1	0	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	a0009	538	1	0	0	1	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	a0010	538	1	1	0	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	a0011	538	1	0	0	0	0	1	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	a0012	538	1	0	0	0	0	1	copy fasta	NAPRT	chr8	143569785	143583330
NAPSA_chr19_50353477_50370639	1/1	a0001	420	199	37	40	85	8	27	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	a0002	420	121	44	22	40	3	12	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	a0003	420	7	0	2	0	1	4	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	a0004	420	6	6	0	0	0	0	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	a0005	420	3	2	1	0	0	0	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	a0006	420	2	0	0	2	0	0	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	a0007	420	2	2	0	0	0	0	copy fasta	NAPSA	chr19	50353477	50370639