JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NAV1_chr1_201534127_201831969	0/0	a0004	2164	11	0	0	11	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	a0005	2164	5	1	3	0	0	1	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	a0006	2164	4	4	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	a0007	2164	2	2	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	a0008	2164	2	1	1	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	a0009	2164	2	0	0	2	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	a0010	2164	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	a0011	2164	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	a0012	2164	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	a0013	2164	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	a0014	2164	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	a0015	2164	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	a0016	2164	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	a0017	2164	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	a0018	2164	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV2_chr11_19707837_20126601	0/0	a0001	2429	48	33	10	3	1	1	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	a0002	2429	46	15	13	7	2	9	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	a0003	2429	18	14	2	2	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	a0004	2429	18	1	5	7	1	4	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	a0005	2429	7	3	0	3	1	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	a0006	2429	5	0	2	2	0	1	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	a0007	2429	5	0	0	3	1	1	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	a0008	2429	3	1	1	1	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	a0009	2429	2	0	1	1	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	a0010	2429	1	0	0	1	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	a0011	2429	1	0	0	1	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	a0012	2429	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	a0013	2429	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	a0014	2429	1	0	0	0	1	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	a0015	2429	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	a0016	2429	1	0	1	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	a0017	2429	1	0	0	0	1	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	a0018	2429	1	0	1	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	a0019	2429	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	a0020	2429	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	a0021	2429	1	0	0	1	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	a0022	2429	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	a0023	2429	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV3_chr12_77825894_78218010	0/1	a0001	2385	159	35	31	58	10	24	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	a0002	2385	7	2	0	4	0	1	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	1/0	a0003	2385	7	5	1	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	a0004	2385	3	3	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	a0005	2385	2	2	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	a0006	2385	1	0	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	a0007	2385	1	0	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	a0008	2385	1	0	0	0	0	1	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	a0009	2385	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	a0010	2385	1	0	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	a0011	2385	1	0	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	a0012	2385	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010