Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
APOBEC3F_chr22_39035864_39060972	0/0	a0009	373	2	2	0	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	a0010	373	1	0	0	0	0	1	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	a0011	373	1	0	0	0	0	1	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3G_chr22_39072275_39092743	1/1	a0001	384	336	42	61	180	15	36	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	a0002	384	52	29	5	14	3	1	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	a0003	384	25	14	5	5	0	1	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	a0004	384	4	4	0	0	0	0	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	a0005	384	1	0	0	0	0	1	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	a0006	384	1	0	1	0	0	0	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	a0007	384	1	0	0	1	0	0	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	a0008	190	1	1	0	0	0	0	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	a0009	384	1	0	0	0	0	1	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	a0010	384	1	0	0	1	0	0	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	a0011	373	1	0	0	1	0	0	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3H_chr22_39092244_39109067	1/0	a0001	183	210	15	51	110	6	27	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/1	a0002	183	69	38	7	18	3	2	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	a0003	182	64	26	5	27	1	5	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	a0004	182	54	8	15	18	4	9	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	a0005	182	3	0	0	3	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	a0006	182	3	0	2	0	0	1	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	a0007	182	3	3	0	0	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	a0008	183	3	0	0	3	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	a0009	182	2	0	0	2	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	a0010	183	2	2	0	0	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	a0011	183	2	0	0	2	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	a0012	183	1	0	0	1	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	a0013	183	1	0	0	1	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	a0014	183	1	0	0	1	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC4_chr1_183641275_183658316	1/1	a0001	367	249	43	48	119	10	27	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	a0002	367	90	29	18	29	4	10	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	a0003	367	24	12	1	10	0	1	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	a0004	367	8	7	1	0	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	a0005	367	3	2	1	0	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	a0006	367	1	0	0	0	0	1	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	a0007	367	1	1	0	0	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	a0008	367	1	0	1	0	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	a0009	367	1	0	0	0	0	1	copy fasta	APOBEC4	chr1	183641275	183658316
APOBR_chr16_28489643_28503964	0/0	a0001	1097	208	23	35	111	5	34	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0002	1088	70	3	31	23	5	8	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0003	1088	17	16	1	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0004	1097	15	0	0	15	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0005	1097	12	11	1	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0006	1088	12	0	0	12	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	1/0	a0007	1097	8	7	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0008	1097	7	7	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0009	1088	5	5	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0010	1097	4	4	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0011	1097	4	0	0	4	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0012	1097	4	0	1	0	2	1	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0013	1097	3	3	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964