JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NAV3_chr12_77825894_78218010	0/0	a0013	2385	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAXD_chr13_110610545_110644996	1/1	a0001	329	320	78	66	126	13	35	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	a0002	329	36	2	10	15	3	6	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	a0003	329	29	7	1	18	0	3	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	a0004	329	2	0	0	0	0	2	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	a0005	329	2	2	0	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	a0006	329	1	1	0	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	a0007	329	1	0	1	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	a0008	329	1	0	0	1	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXE_chr1_156586776_156599299	0/1	a0001	288	394	79	70	192	10	42	copy fasta	NAXE	chr1	156586776	156599299
NAXE_chr1_156586776_156599299	1/0	a0002	288	35	19	3	6	2	4	copy fasta	NAXE	chr1	156586776	156599299
NAXE_chr1_156586776_156599299	0/0	a0003	288	2	0	0	2	0	0	copy fasta	NAXE	chr1	156586776	156599299
NAXE_chr1_156586776_156599299	0/0	a0004	288	1	0	1	0	0	0	copy fasta	NAXE	chr1	156586776	156599299
NBAS_chr2_15161916_15566334	1/0	a0001	2371	82	26	11	37	1	6	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/1	a0002	2371	62	5	15	31	3	7	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0003	2371	15	5	3	5	1	1	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0004	2371	10	4	0	6	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0005	2371	7	0	0	6	0	1	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0006	2371	4	2	2	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0007	2371	4	3	1	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0008	2371	3	3	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0009	2371	2	0	1	0	0	1	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0010	2371	2	2	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0011	2371	2	2	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0012	2371	2	1	1	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0013	2371	2	2	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0014	2371	2	0	0	2	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0015	2371	2	2	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0016	2371	1	0	0	1	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0017	2371	1	0	0	1	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0018	2371	1	0	0	0	0	1	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0019	2371	1	0	1	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0020	2371	1	1	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0021	2371	1	0	1	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0022	2371	1	0	1	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0023	2371	1	0	0	0	1	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0024	2371	1	0	1	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0025	2371	1	0	0	0	0	1	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0026	2371	1	1	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0027	2371	1	1	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0028	2371	1	1	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0029	2371	1	1	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0030	2371	1	1	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0031	2371	1	0	0	0	0	1	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0032	2371	1	0	0	0	0	1	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0033	2371	1	0	1	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0034	2371	1	0	0	1	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0035	2371	1	0	1	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0036	2371	1	0	0	1	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	a0037	2371	1	0	0	1	0	0	copy fasta	NBAS	chr2	15161916	15566334