JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NBEAL2_chr3_46974666_47014701	0/0	a0027	2754	1	1	0	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0028	2754	1	1	0	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0029	2754	1	0	1	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0030	2754	1	0	0	1	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEA_chr13_34937270_35677736	1/1	a0001	2967	101	48	8	31	2	10	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	a0002	2967	10	4	0	2	0	4	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	a0003	2967	4	3	1	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	a0004	2967	2	2	0	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	a0005	2967	1	1	0	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	a0006	2967	1	1	0	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	a0007	2967	1	0	0	1	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	a0008	2967	1	0	1	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	a0009	2967	1	1	0	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBL1_chr1_19639311_19663452	1/1	a0001	181	409	93	78	176	16	44	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	a0002	181	1	1	0	0	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	a0003	181	1	1	0	0	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	a0004	181	1	1	0	0	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBN_chr8_89928331_89989667	1/1	a0001	754	222	62	33	90	10	25	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	a0002	754	149	12	31	83	8	15	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	a0003	754	4	4	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	a0004	754	2	2	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	a0005	754	2	2	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	a0006	754	1	0	0	1	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	a0007	754	1	1	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	a0008	754	1	0	1	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	a0009	754	1	1	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	a0010	754	1	0	0	1	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	a0011	754	1	0	0	1	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	a0012	754	1	1	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	a0013	754	1	0	1	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	a0014	754	1	1	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	a0015	754	1	0	0	1	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	a0016	754	1	0	0	1	0	0	copy fasta	NBN	chr8	89928331	89989667
NBPF10_chr1_146059711_146149804	0/0	a0001	3307	8	0	1	7	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	a0002	3795	5	0	5	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	a0003	3795	5	0	0	5	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	a0004	3524	5	0	4	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	a0005	1525	4	0	1	3	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	a0006	3795	4	0	3	0	1	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	a0007	3526	4	0	0	4	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	a0008	3795	3	3	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	a0009	1525	3	3	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	a0010	3795	3	0	0	3	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	a0011	3795	3	1	2	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	a0012	3551	3	0	0	0	0	3	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	a0013	3421	3	0	0	2	1	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	a0014	3795	3	0	0	0	3	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	a0015	1500	2	1	1	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	a0016	3795	2	2	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	a0017	3795	2	2	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804