JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NBPF11_chr1_148097151_148157281	0/1	a0003	865	9	0	4	0	2	2	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	a0004	865	4	0	0	4	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	a0005	865	4	4	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	a0006	865	2	0	2	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	a0007	865	2	0	2	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	a0008	865	2	2	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	a0009	865	1	0	0	0	1	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	a0010	865	1	0	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	a0011	865	1	0	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	a0012	865	1	0	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	a0013	865	1	0	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	a0014	865	1	0	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	a0015	865	1	0	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	a0016	865	1	0	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF12_chr1_146933324_147001198	0/0	a0001	1457	26	3	9	14	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0002	1460	21	0	11	7	0	3	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0003	958	19	4	6	4	0	5	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	1/1	a0004	1457	12	2	6	0	2	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0005	1457	4	4	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0006	958	3	3	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0007	958	2	2	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0008	445	2	0	1	0	0	1	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0009	1460	2	0	1	1	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0010	1460	2	0	0	2	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0011	1457	2	0	1	0	1	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0012	1186	2	2	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0013	1186	2	2	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0014	1211	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0015	1457	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0016	1460	1	0	1	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0017	1457	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0018	958	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0019	958	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0020	1311	1	0	1	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0021	1460	1	0	0	1	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0022	1311	1	0	0	1	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0023	1457	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0024	1457	1	0	1	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0025	1457	1	0	0	1	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0026	1308	1	0	0	1	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0027	1213	1	0	0	1	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0028	1189	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0029	1457	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0030	942	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0031	1457	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0032	1457	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0033	1457	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0034	1457	1	0	0	0	0	1	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0035	1213	1	0	0	1	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	a0036	1457	1	0	0	0	1	0	copy fasta	NBPF12	chr1	146933324	147001198