JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NBPF14_chr1_148526385_148601011	1/0	a0001	2988	14	1	5	0	4	3	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0002	931	10	2	3	3	0	2	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0003	931	9	1	3	3	1	1	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0004	2988	7	1	5	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0005	2988	7	1	1	3	0	2	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0006	2988	6	0	0	6	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0007	2988	4	1	1	2	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0008	2988	4	0	0	4	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0009	2988	4	0	3	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0010	2988	4	0	4	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0011	2988	4	0	0	4	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0012	2988	3	0	2	0	1	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0013	2988	3	0	2	0	1	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0014	2988	3	2	1	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0015	2988	3	3	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0016	2988	3	1	1	0	0	1	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0017	931	3	3	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0018	2988	3	0	0	3	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0019	2988	2	0	0	2	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0020	2988	2	0	0	2	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0021	2988	2	0	0	0	0	2	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0022	2988	2	0	0	2	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0023	2988	2	2	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0024	2988	2	0	2	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0025	1768	2	2	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0026	2988	2	2	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0027	2988	2	0	2	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0028	2988	2	0	2	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0029	2988	2	0	0	2	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0030	2988	2	2	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0031	2988	2	2	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0032	2988	2	0	0	1	0	1	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0033	2988	2	0	0	0	2	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0034	2226	2	0	2	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0035	2988	2	0	0	0	0	2	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0036	2988	2	2	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0037	2988	2	0	0	2	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0038	2988	2	0	0	2	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0039	2988	2	0	0	2	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0040	931	2	2	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0041	2988	1	0	0	0	0	1	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0042	2564	1	0	0	0	1	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0043	2988	1	0	0	0	0	1	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0044	1131	1	0	1	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0045	2988	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0046	2988	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0047	2988	1	0	1	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0048	2988	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0049	2988	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0050	2988	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011