Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
APOBR_chr16_28489643_28503964	0/0	a0014	1088	3	0	3	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0015	1088	3	3	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0016	1079	2	0	0	2	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0017	1088	2	1	0	1	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0018	1097	2	0	0	2	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0019	1088	2	2	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0020	1088	2	1	0	1	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0021	1097	1	0	1	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0022	363	1	0	0	1	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0023	1097	1	1	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0024	1088	1	1	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/1	a0025	1088	1	0	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0026	1088	1	0	0	0	0	1	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0027	1088	1	1	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0028	1088	1	0	1	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0029	1097	1	1	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0030	1097	1	0	0	1	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0031	623	1	0	0	1	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0032	1097	1	0	0	1	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0033	1097	1	0	0	0	0	1	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0034	1097	1	0	0	1	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0035	1097	1	0	0	0	0	1	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0036	1097	1	0	0	1	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0037	1097	1	0	0	1	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0038	1097	1	1	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0039	1088	1	1	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0040	1088	1	1	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	a0041	1088	1	1	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOB_chr2_20996429_21049073	0/0	a0001	4563	71	4	4	47	1	15	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0002	4563	37	16	11	1	2	7	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0003	4560	29	3	7	10	2	7	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0004	4563	24	0	0	23	0	1	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0005	4563	20	7	8	5	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0006	4563	16	0	2	11	2	1	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0007	4563	12	2	3	3	2	2	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0008	4560	10	0	0	10	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0009	4563	7	5	1	0	0	1	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0010	4563	7	7	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0011	4563	6	5	1	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0012	4560	6	0	6	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0013	4563	5	0	0	5	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0014	4563	4	4	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0015	4563	4	3	1	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0016	4563	4	1	3	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0017	4560	4	1	0	3	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0018	4560	4	4	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0019	4563	3	2	1	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0020	4560	3	0	0	3	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0021	4560	3	1	1	1	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0022	4563	2	0	2	0	0	0	copy fasta	APOB	chr2	20996429	21049073