JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NBPF14_chr1_148526385_148601011	0/0	a0101	2988	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0102	2988	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0103	2988	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0104	2988	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0105	2988	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0106	2575	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0107	2470	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0108	2988	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0109	931	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0110	931	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0111	2988	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0112	2988	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0113	2988	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0114	2988	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0115	2988	1	0	1	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0116	2988	1	0	1	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0117	2988	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0118	2988	1	0	1	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0119	931	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0120	2988	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0121	931	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0122	2988	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0123	931	1	0	1	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	a0124	2988	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF15_chr1_144416390_144466669	1/1	a0001	670	330	58	72	158	13	27	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	a0002	670	13	12	0	0	0	1	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	a0003	670	8	8	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	a0004	670	7	0	2	0	3	2	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	a0005	670	4	0	3	0	1	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	a0006	670	3	0	0	0	0	3	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	a0007	670	3	0	0	3	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	a0008	670	3	1	0	0	1	1	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	a0009	670	3	3	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	a0010	670	2	2	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	a0011	670	2	0	0	0	0	2	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	a0012	670	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	a0013	670	1	0	0	0	0	1	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	a0014	670	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	a0015	670	1	0	0	0	0	1	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	a0016	670	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	a0017	670	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	a0018	670	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	a0019	670	1	0	0	1	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	a0020	632	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	a0021	670	1	0	1	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	a0022	670	1	0	0	0	0	1	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	a0023	670	1	0	0	0	0	1	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	a0024	670	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	a0025	670	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	a0026	670	1	0	0	1	0	0	copy fasta	NBPF15	chr1	144416390	144466669