JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NBPF15_chr1_144416390_144466669	0/0	a0027	670	1	0	0	1	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF19_chr1_149470045_149561361	0/0	a0001	3843	7	1	4	1	1	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0002	3843	6	0	0	6	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0003	3843	5	0	0	4	0	1	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0004	3843	4	4	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0005	3599	4	0	0	4	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0006	416	4	4	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0007	1403	3	0	0	3	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0008	3843	3	0	3	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0009	3843	3	0	2	0	1	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0010	3599	3	0	3	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0011	3843	3	0	0	3	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0012	3345	3	0	0	3	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0013	3843	3	3	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0014	3843	3	0	3	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0015	3843	3	3	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0016	3355	2	0	0	0	0	2	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0017	3843	2	2	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0018	3843	2	2	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	1/0	a0019	3843	2	0	0	0	0	1	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0020	3355	2	0	1	0	0	1	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0021	3599	2	2	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0022	3843	2	2	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0023	3843	2	2	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0024	3843	2	2	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/1	a0025	3599	2	0	0	0	0	1	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0026	3355	2	0	2	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0027	3599	2	0	0	2	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0028	3843	2	1	0	0	0	1	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0029	3843	2	2	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0030	3355	2	2	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0031	3843	2	0	0	2	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0032	3843	2	0	2	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0033	3843	2	0	0	2	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0034	3843	2	0	0	2	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0035	3843	2	0	0	0	0	2	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0036	3843	2	0	0	2	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0037	3843	2	0	2	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0038	3843	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0039	3843	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0040	3843	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0041	103	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0042	3843	1	1	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0043	3843	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0044	3843	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0045	3843	1	1	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0046	3843	1	1	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0047	3355	1	0	1	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0048	3843	1	0	1	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0049	3599	1	0	0	0	0	1	copy fasta	NBPF19	chr1	149470045	149561361