JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NBPF19_chr1_149470045_149561361	0/0	a0200	3843	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0201	3599	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0202	3843	1	0	0	0	1	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0203	3843	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0204	3843	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0205	3843	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0206	3599	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0207	1717	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0208	1717	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0209	3843	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0210	3599	1	0	1	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0211	3843	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	a0212	3599	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF20_chr1_145285005_145430603	1/0	a0001	5645	1	0	0	0	0	0	copy fasta	NBPF20	chr1	145285005	145430603
NBPF20_chr1_145285005_145430603	0/0	a0002	1179	1	0	1	0	0	0	copy fasta	NBPF20	chr1	145285005	145430603
NBPF20_chr1_145285005_145430603	0/0	a0003	5645	1	0	0	1	0	0	copy fasta	NBPF20	chr1	145285005	145430603
NBPF20_chr1_145285005_145430603	0/1	a0004	4838	1	0	0	0	0	0	copy fasta	NBPF20	chr1	145285005	145430603
NBPF20_chr1_145285005_145430603	0/0	a0005	5551	1	0	1	0	0	0	copy fasta	NBPF20	chr1	145285005	145430603
NBPF20_chr1_145285005_145430603	0/0	a0006	1423	1	0	0	1	0	0	copy fasta	NBPF20	chr1	145285005	145430603
NBPF3_chr1_21435137_21489900	0/0	a0001	633	148	14	27	81	4	22	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	1/0	a0002	633	92	22	14	48	3	4	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	a0003	633	60	3	6	37	4	10	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	a0004	630	18	10	8	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	a0005	633	18	0	6	12	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	a0006	633	9	7	2	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	a0007	633	7	7	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	a0008	633	5	0	2	0	1	2	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	a0009	633	5	3	0	0	2	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	a0010	633	5	5	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	a0011	633	4	3	1	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	a0012	633	4	4	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	a0013	633	4	3	1	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	a0014	633	2	2	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	a0015	630	1	1	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	a0016	375	1	0	0	0	0	1	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	a0017	633	1	0	0	0	0	1	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	a0018	633	1	1	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	a0019	633	1	1	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	a0020	633	1	1	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	a0021	630	1	1	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	a0022	633	1	1	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	a0023	633	1	0	1	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	a0024	633	1	0	0	1	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	a0025	633	1	0	0	1	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/1	a0026	633	1	0	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	a0027	633	1	1	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF4_chr1_108217464_108249076	1/0	a0001	638	72	20	14	24	5	8	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/1	a0002	638	22	9	5	4	1	2	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	a0003	638	10	0	0	7	1	2	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	a0004	638	9	0	2	5	1	1	copy fasta	NBPF4	chr1	108217464	108249076