JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NBPF4_chr1_108217464_108249076	0/0	a0005	638	4	0	0	4	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	a0006	638	3	3	0	0	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	a0007	638	3	3	0	0	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	a0008	638	3	0	1	2	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	a0009	638	2	0	2	0	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	a0010	638	1	1	0	0	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	a0011	638	1	1	0	0	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	a0012	638	1	1	0	0	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	a0013	638	1	0	0	1	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	a0014	638	1	0	0	1	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	a0015	638	1	0	0	0	0	1	copy fasta	NBPF4	chr1	108217464	108249076
NBPF6_chr1_108445343_108476920	1/0	a0001	638	20	7	5	6	0	1	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/1	a0002	638	12	6	2	0	1	2	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	a0003	638	11	4	1	3	1	2	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	a0004	638	9	8	1	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	a0005	638	5	5	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	a0006	638	4	0	2	1	0	1	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	a0007	638	1	1	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	a0008	638	1	1	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	a0009	638	1	1	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	a0010	638	1	1	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	a0011	638	1	1	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	a0012	145	1	1	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	a0013	638	1	0	1	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF8_chr1_120410035_120474676	0/0	a0001	59	87	44	21	8	5	9	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	a0002	57	75	5	15	46	3	6	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	a0003	252	33	13	3	15	0	2	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	1/1	a0004	942	27	0	2	15	0	8	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	a0005	942	27	3	18	1	1	4	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	a0006	252	17	3	0	14	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	a0007	942	9	0	2	0	3	4	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	a0008	942	4	4	0	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	a0009	252	2	0	1	0	0	1	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	a0010	671	2	0	0	0	0	2	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	a0011	252	1	0	0	1	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	a0012	59	1	0	0	0	1	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	a0013	73	1	0	0	1	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	a0014	361	1	0	0	1	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	a0015	942	1	0	0	0	0	1	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	a0016	942	1	0	0	0	1	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	a0017	942	1	0	0	0	0	1	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	a0018	252	1	0	0	1	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	a0019	73	1	0	0	1	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF9_chr1_149047186_149108551	1/0	a0001	1111	104	9	23	50	10	11	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0002	1111	81	5	4	63	1	8	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0003	942	35	15	12	4	1	3	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0004	942	29	7	10	9	0	3	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0005	942	17	8	1	1	1	6	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0006	1111	13	12	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0007	1111	8	8	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551