JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NBPF9_chr1_149047186_149108551	0/0	a0008	1111	5	4	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0009	1111	4	4	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0010	1111	4	0	0	4	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0011	942	3	0	0	3	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0012	942	3	3	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0013	942	3	0	2	0	1	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0014	1111	3	0	2	0	0	1	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0015	1111	2	0	0	2	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0016	942	2	2	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0017	1111	2	0	1	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0018	1111	2	0	0	2	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0019	1111	2	0	0	0	0	2	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0020	7	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0021	21	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0022	747	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0023	1111	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0024	1111	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0025	1111	1	0	0	0	0	1	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0026	1111	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0027	1111	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0028	1111	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0029	747	1	0	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0030	748	1	0	0	0	0	1	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0031	942	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0032	812	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0033	1111	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0034	1111	1	0	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/1	a0035	671	1	0	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0036	1111	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0037	942	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0038	942	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0039	942	1	0	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0040	1111	1	0	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	a0041	942	1	0	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBR1_chr17_43166214_43216688	1/0	a0001	966	180	60	31	66	5	17	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/1	a0002	966	117	18	24	52	5	17	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	a0003	966	8	7	1	0	0	0	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	a0004	966	3	3	0	0	0	0	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	a0005	966	2	0	0	2	0	0	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	a0006	966	1	0	0	1	0	0	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	a0007	966	1	0	0	1	0	0	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	a0008	966	1	1	0	0	0	0	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	a0009	966	1	1	0	0	0	0	copy fasta	NBR1	chr17	43166214	43216688
NCALD_chr8_101681542_101795969	1/1	a0001	193	300	82	50	130	2	34	copy fasta	NCALD	chr8	101681542	101795969
NCAM1_chr11_112956420_113283436	0/0	a0001	858	236	58	50	96	12	20	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	a0002	858	4	2	0	0	0	2	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	a0003	858	2	0	0	2	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM2_chr21_20993409_21548329	0/0	a0001	837	71	37	11	11	0	12	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	a0002	837	52	26	9	13	2	2	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	a0003	837	7	5	2	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329