JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NCAM2_chr21_20993409_21548329	0/0	a0004	837	1	1	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	a0005	837	1	1	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAN_chr19_19206958_19257233	1/1	a0001	1321	284	83	62	90	9	38	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	a0002	1321	12	0	1	6	1	4	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	a0003	1321	11	6	0	5	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	a0004	1321	3	0	0	3	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	a0005	1321	1	0	1	0	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	a0006	1321	1	1	0	0	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	a0007	1321	1	0	0	1	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	a0008	1321	1	1	0	0	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	a0009	1321	1	1	0	0	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	a0010	1321	1	0	1	0	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	a0011	1321	1	0	1	0	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	a0012	1321	1	0	0	1	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAPD2_chr12_6489102_6536955	0/0	a0001	1401	210	71	41	72	3	23	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	1/1	a0002	1401	85	2	14	52	6	9	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	a0003	1401	78	4	7	56	3	8	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	a0004	1401	17	1	5	2	3	6	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	a0005	1401	12	0	0	10	0	2	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	a0006	1401	8	0	8	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	a0007	1401	5	5	0	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	a0008	1401	3	3	0	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	a0009	1401	3	3	0	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	a0010	1401	2	0	0	2	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	a0011	1401	1	0	1	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	a0012	48	1	1	0	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	a0013	1401	1	0	0	1	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	a0014	1401	1	1	0	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	a0015	1401	1	0	0	1	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	a0016	1401	1	0	0	0	1	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	a0017	1401	1	0	0	1	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	a0018	1401	1	0	0	1	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	a0019	1401	1	1	0	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD3_chr11_134145113_134228967	1/1	a0001	1498	326	69	65	150	9	31	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	a0002	1498	13	12	1	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	a0003	1498	5	5	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	a0004	1498	5	0	0	2	1	2	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	a0005	1498	4	0	0	4	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	a0006	1498	3	3	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	a0007	1498	3	3	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	a0008	1498	2	0	2	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	a0009	1498	1	0	0	0	0	1	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	a0010	1498	1	1	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	a0011	1498	1	0	0	1	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	a0012	1498	1	0	1	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	a0013	1498	1	1	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	a0014	1498	1	0	1	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	a0015	1498	1	0	0	1	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	a0016	1498	1	1	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	a0017	1498	1	1	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967