JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NCAPG2_chr7_158626169_158709804	1/1	a0001	1143	336	79	64	139	12	40	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	a0002	1143	18	0	0	18	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	a0003	1143	4	4	0	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	a0004	1143	3	3	0	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	a0005	1143	2	2	0	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	a0006	1143	2	0	2	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	a0007	1143	1	0	1	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	a0008	1143	1	1	0	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	a0009	1143	1	1	0	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	a0010	1143	1	1	0	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	a0011	1143	1	0	1	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	a0012	1143	1	0	0	1	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	a0013	1143	1	0	1	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	a0014	1143	1	0	1	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	a0015	1143	1	1	0	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	a0016	374	1	0	0	1	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	a0017	1143	1	0	0	1	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	a0018	1143	1	0	0	1	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	a0019	1143	1	0	0	1	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG_chr4_17805979_17849865	1/1	a0001	1015	316	84	57	134	6	33	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	a0002	1015	47	4	14	18	2	9	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	a0003	1015	20	0	0	20	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	a0004	1015	4	0	0	4	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	a0005	1015	3	3	0	0	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	a0006	1015	2	0	0	0	0	2	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	a0007	1015	1	1	0	0	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	a0008	1015	1	0	1	0	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	a0009	1015	1	1	0	0	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	a0010	1015	1	1	0	0	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPH2_chr22_50503224_50529780	1/1	a0001	605	374	91	75	148	16	42	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	a0002	605	5	3	2	0	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	a0003	605	1	0	1	0	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	a0004	605	1	0	0	1	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	a0005	605	1	0	0	1	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	a0006	605	1	0	1	0	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	a0007	605	1	0	1	0	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH_chr2_96330766_96382091	1/1	a0001	741	204	61	35	91	7	8	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	a0002	741	142	24	25	66	3	24	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	a0003	741	2	0	0	2	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	a0004	741	2	2	0	0	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	a0005	741	1	0	0	1	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	a0006	741	1	0	0	1	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	a0007	741	1	0	0	1	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	a0008	741	1	0	1	0	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	a0009	741	1	0	1	0	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	a0010	741	1	1	0	0	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCBP1_chr9_97628821_97678748	1/1	a0001	790	360	89	62	154	13	40	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	a0002	790	3	0	2	0	1	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	a0003	790	1	1	0	0	0	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP2AS2_chr3_196937674_196948543	1/1	a0001	99	430	92	80	198	18	40	copy fasta	NCBP2AS2	chr3	196937674	196948543