Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
APOB_chr2_20996429_21049073	0/0	a0023	4563	2	0	0	2	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0024	4563	2	0	2	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/1	a0025	4563	2	0	0	0	0	1	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0026	4563	2	0	2	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0027	4563	2	2	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0028	4563	2	2	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0029	4563	2	2	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0030	4560	2	0	1	1	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0031	4560	2	0	2	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0032	4560	2	0	0	1	0	1	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0033	4560	2	1	1	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0034	4563	1	0	1	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0035	4563	1	0	0	1	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0036	4563	1	1	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0037	4563	1	1	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0038	4563	1	1	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0039	4563	1	1	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0040	4563	1	1	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	1/0	a0041	4563	1	0	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0042	4563	1	1	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0043	4563	1	1	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0044	4563	1	0	1	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0045	4563	1	1	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0046	4563	1	0	0	1	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0047	4563	1	0	0	1	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0048	4563	1	0	0	1	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0049	4563	1	0	0	0	1	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0050	4563	1	0	0	1	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0051	4563	1	0	0	1	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0052	4563	1	0	1	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0053	4563	1	0	0	0	1	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0054	4563	1	0	1	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0055	4563	1	0	1	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0056	4563	1	0	1	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0057	4563	1	0	0	1	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0058	4563	1	0	0	1	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0059	4563	1	0	1	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0060	4563	1	1	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0061	4563	1	1	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0062	4563	1	1	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0063	4563	1	1	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0064	4560	1	0	0	1	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0065	4560	1	1	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0066	4560	1	0	0	0	1	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0067	4560	1	0	1	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0068	4560	1	0	1	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0069	4560	1	1	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0070	4560	1	0	0	1	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0071	4560	1	0	1	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	a0072	4560	1	0	1	0	0	0	copy fasta	APOB	chr2	20996429	21049073